CATH Domain: 1q08A00 XML data for domain: 1q08A00

Molscript image for 1q08A00
1q08A00
PDB coordinates for domain 1q08A00

PDB 1q08, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.1660 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2
1.10.1660.10 Gene3D
1.10.1660.10.1
1.10.1660.10.1.1
1.10.1660.10.1.1.1
1.10.1660.10.1.1.1.1
1.10.1660.10.1.1.1.1.1

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Segment boundaries for domain 1q08A00

Chopping figure for domain 1q08A00
DomainStart PDB ResidueStop PDB Residue
1q08A00 43 136

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 1.10.1660.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1q06A00 80.36 MerR family transcriptional regulator, copper efflux regulatorTranscriptionTranscription activator activityTranscription repressor activityHTH-type transcriptional regulator cueR 1.10.1660.10 122 28 66 2.67 4.02
1jekA00 73.71 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 15 42 1.89 4.44
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1q08A00
SDLQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSV
YCSILEALEQGASG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1q08A00
SDLQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSV
YCSILEALEQGASGVKSGC
BLAST against CATH

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Domain History Events (5)

Domain move by cuff on 26 Apr 2006 15:19

COMMENT: Lesley - Yes, merge. Excellent scores and superpositions. Problems with domain chopping have been identified from version 2.6. The two classifications need to be reviewed and fixed in version 3.1. FINAL: Lesley - Yes, merge. Move sequence family of the following: 1q08A00, 1q06A00 to 1.10.1660.10 IAW SCOP.

Flow stage update by cuff on 26 Apr 2006 15:19

COMMENT: Lesley - Yes, merge. Excellent scores and superpositions. Problems with domain chopping have been identified from version 2.6. The two classifications need to be reviewed and fixed in version 3.1. FINAL: Lesley - Yes, merge. Move sequence family of the following: 1q08A00, 1q06A00 to 1.10.1660.10 IAW SCOP.

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:34

Cut based on decision in database "DomChop" on "cathdb"