CATH Domain: 1pyfA00 XML data for domain: 1pyfA00

Molscript image for 1pyfA00
1pyfA00
PDB coordinates for domain 1pyfA00

PDB 1pyf, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.100 NADP-dependent oxidoreductase Gene3D
3.20.20.100.6
3.20.20.100.6.1
3.20.20.100.6.1.1
3.20.20.100.6.1.1.1
3.20.20.100.6.1.1.1.1

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Segment boundaries for domain 1pyfA00

Chopping figure for domain 1pyfA00
DomainStart PDB ResidueStop PDB Residue
1pyfA00 2 312

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.20.20.100.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3eauA00 84.17 Rattus norvegicusVoltage-gated potassium channel subunit beta-2Potassium voltage-gated channel, Shaker-related subfamily A, beta member 2Protein heterooligomerizationProtein binding 3.20.20.100 327 25 90 2.85 3.14
1lqaA00 82.88 Protein tasEscherichia coli K-12 3.20.20.100 346 24 83 2.91 3.50
2wzmA00 82.51 Uncharacterized oxidoreductase MSMEG_2407Mycobacterium smegmatis str. MC2 155 3.20.20.100 274 22 80 2.18 2.71
1ur3M00 82.46 Escherichia coli K-12Oxidoreductase ydhF 3.20.20.100 290 20 87 2.93 3.37
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pyfA00
KKAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTLDTAYIYGIGRSEELIGEVLREFNREDVVIA
TKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEKKAGKIRSIGVSNFSLEQLK
EANKDGLVDVLQGEYNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGKYTEDTTFPEGDLRNEQEHFKGERFKENIR
KVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAPG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pyfA00
XKKAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTXLDTAYIYGIGRSEELIGEVLREFNREDVV
IATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEXKKAGKIRSIGVSNFSLE
QLKEANKDGLVDVLQGEYNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGKYTEDTTFPEGDLRNEQEHFKGERFKE
NIRKVNKLAPIAEKHNVDIPHIVLAWYLARPEIDILIPGAKRADQLIDNIKTADVTLSQEDISFIDKLFAPG
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:34

Cut based on decision in database "DomChop" on "cathdb"