CATH Domain: 1pueE00 XML data for domain: 1pueE00

Molscript image for 1pueE00
1pueE00
PDB coordinates for domain 1pueE00

PDB 1pue, Chain E, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.42
1.10.10.10.42.1
1.10.10.10.42.1.1
1.10.10.10.42.1.1.1
1.10.10.10.42.1.1.1.1

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Segment boundaries for domain 1pueE00

Chopping figure for domain 1pueE00
DomainStart PDB ResidueStop PDB Residue
1pueE00 171 258

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 1.10.10.10.42.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1k78B00 87.62 Mus musculusProtein C-ets-1Positive regulation of transcription from RNA polymerase II promoterTranscription factor complexProtein binding 1.10.10.10 102 35 81 1.52 1.87
2pi0A01 83.51 Interferon regulatory factor 3Interferon regulatory factor 3RNA polymerase II transcription factor activityTranscription from RNA polymerase II promoterCytosolic DNA-sensing pathway 1.10.10.10 96 18 82 2.98 3.62
2irfG00 83.36 Mus musculusInterferon regulatory factor 2Interferon regulatory factor 2 1.10.10.10 109 19 75 2.13 2.83
1gvjA00 81.28 Negative regulation of cell cycleNucleusPositive regulation of cellular component movementRNA polymerase II transcription factor activityProtein binding 1.10.10.10 141 35 59 1.49 2.50
1jhfA02 80.07 Repressor LexA [EC:3.4.21.88]TranscriptionDNA bindingLexA repressorTranscription repressor activity 1.10.10.10 69 10 70 3.51 4.98
1hksA00 78.13 NucleusResponse to heatProtein bindingDrosophila melanogasterPolytene chromosome 1.10.10.10 106 13 73 2.80 3.81
3cuqA02 77.93 ESCRT-II complex subunit VPS22Transcription factor bindingRegulation of transcription from RNA polymerase II promoterHomo sapiensVacuolar-sorting protein SNF8 1.10.10.10 81 11 77 3.51 4.54
1ft9A02 77.58 Rhodospirillum rubrumCooA protein 1.10.10.10 79 13 78 3.77 4.81
1lddA00 77.57 Mitotic sister chromatid segregationProtein ubiquitinationCyclin catabolic processMeiosis - yeastAnaphase-promoting complex subunit 2 1.10.10.10 74 12 78 3.62 4.62
3cuqB03 75.60 Homo sapiensVacuolar protein-sorting-associated protein 36ESCRT-II complex subunit VPS36Endocytosis 1.10.10.10 69 11 65 3.16 4.79
1pp8O00 75.58 39 kDa initiator binding proteinTrichomonas vaginalis 1.10.10.10 97 14 71 2.97 4.18
1w1wE00 75.41 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 7 71 3.51 4.90
1yqaA00 74.85 Histone H1/5Regulation of transcription, DNA-dependentDNA bindingNuclear nucleosomeHistone H1 1.10.10.10 87 8 85 4.23 4.96
2fokA02 73.90 Planomicrobium okeanokoitesType-2 restriction enzyme FokI 1.10.10.10 82 9 70 3.43 4.87
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pueE00
KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVKKKL
TYQFSGEV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pueE00
KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVKKKL
TYQFSGEVL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"