CATH Domain: 1ps1A00 XML data for domain: 1ps1A00

Molscript image for 1ps1A00
1ps1A00
PDB coordinates for domain 1ps1A00

PDB 1ps1, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.600 Farnesyl Diphosphate Synthase
1.10.600.10 Farnesyl Diphosphate Synthase Gene3D
1.10.600.10.10
1.10.600.10.10.1
1.10.600.10.10.1.1
1.10.600.10.10.1.1.1
1.10.600.10.10.1.1.1.1

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Segment boundaries for domain 1ps1A00

Chopping figure for domain 1ps1A00
DomainStart PDB ResidueStop PDB Residue
1ps1A00 3 313

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1ps1A00
QDVDFHIPLPGRQSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDL
FDGPRGENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRSAAQY
LAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKS
RSVSHMQNEVRARLEQYLLLESCLPKVGEIYQLDTAEREALERYRTDAVRTVIRGSYDWHRSSG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ps1A00
MPQDVDFHIPLPGRQSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFD
DLFDGPRGENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWN
APCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMIL
RREHGWSKSRSVSHMQNEVRARLEQYLLLESCLPKVGEIYQLDTAEREALERYRTDAVRTVIRGSYDWHRSSG
BLAST against CATH

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Domain History Events (5)

Classification merge by cuff on 26 Apr 2006 12:34

COMMENT: Lesley - Scores and superpositions are marginal. Functionally similar - terpenoid biosynthesis pathway. SCOP has these proteins assigned to same fold and superfamily so merge. SCOP uses the name: Fold: Terpenoid synthases FINAL: Lesley - Merge for the above stated reasons.

Flow stage update by cuff on 26 Apr 2006 12:34

COMMENT: Lesley - Scores and superpositions are marginal. Functionally similar - terpenoid biosynthesis pathway. SCOP has these proteins assigned to same fold and superfamily so merge. SCOP uses the name: Fold: Terpenoid synthases FINAL: Lesley - Merge for the above stated reasons.

Set cath from cathlist by auto on 05 Mar 2006 18:14

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:14

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"