CATH Domain: 1ppjD01 XML data for domain: 1ppjD01

Molscript image for 1ppjD01
1ppjD01
PDB coordinates for domain 1ppjD01

PDB 1ppj, Chain D, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.100 Gene3D
1.20.5.100.2
1.20.5.100.2.1
1.20.5.100.2.1.1
1.20.5.100.2.1.1.1
1.20.5.100.2.1.1.1.1

[top]
Segment boundaries for domain 1ppjD01

Chopping figure for domain 1ppjD01
DomainStart PDB ResidueStop PDB Residue
1ppjD01 197 240
1ppjD02 1 196

Structural Neighbourhood (82 entries)

There are 82 matching structural neighberhood comparisons for CATH ID 1.20.5.100.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 82 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2jwaA00 84.37 Heart developmentTransmembrane receptor protein tyrosine kinase signaling pathwayCell proliferationPositive regulation of cell adhesionProtein heterodimerization activity 1.20.5.100 44 4 84 2.79 3.32
1a2xB00 84.18 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 12 70 1.61 2.29
2zxeB01 84.14 1.20.5.170 35 14 77 1.74 2.25
3effK02 83.15 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 4 88 2.88 3.24
1lghB00 82.48 Phaeospirillum molischianumLight-harvesting protein B-800/850 beta 1 chain 1.20.5.250 43 4 81 3.70 4.52
2o1kA00 82.31 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 4 63 1.61 2.53
1ifpA00 82.19 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 0 81 3.07 3.75
2qjyC01 82.15 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 12 65 1.72 2.61
2ifoA00 82.12 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 4 91 2.68 2.94
1r8eA03 82.11 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 6 95 4.07 4.26
2basA02 81.77 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 11 89 3.80 4.26
1slqF02 81.64 Outer capsid protein VP4Rhesus rotavirus 1.20.5.170 32 9 61 1.30 2.12
1rh5B00 81.52 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 9 53 0.71 1.33
2v7qJ00 81.48 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 43 6 70 1.91 2.71
1junA00 81.27 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 4 59 1.45 2.45
2h8pD00 80.98 1.20.5.110 43 6 88 3.92 4.42
1piqA00 80.93 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 3 63 1.70 2.67
1tiiC00 80.86 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 5 81 3.66 4.47
1kv4A00 80.81 Moricin-1Bombyx mori 1.20.5.750 42 4 79 3.26 4.10
3b8eB00 80.74 Sodium/potassium-transporting ATPase subunit beta-1Sus scrofa 1.20.5.170 46 9 95 4.14 4.33
2p7jB01 80.46 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 2 77 2.48 3.21
1e5wA04 80.45 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 11 80 3.94 4.92
1czqA00 80.45 1.20.5.170 45 6 62 1.69 2.72
2qjpB02 80.29 Rhodobacter sphaeroidesCytochrome c1 1.20.5.100 35 11 79 3.25 4.09
1kqfB03 80.26 Two-component systemMetabolic pathwaysGlyoxylate and dicarboxylate metabolismMethane metabolismFormate dehydrogenase activity 1.20.5.480 44 2 88 3.24 3.66
1xrdA01 80.17 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 11 88 3.66 4.13
1gk6B00 80.16 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 13 80 2.45 3.03
1gl2A00 80.15 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 6 83 3.25 3.91
1dp5B00 80.10 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 6 59 1.49 2.52
1ybkA00 79.90 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 6 67 2.39 3.55
1jcdB00 79.85 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 4 63 1.99 3.14
1pfiA00 79.80 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 9 73 2.54 3.44
2k9jB00 79.49 Positive regulation of endothelial cell migrationPlatelet-derived growth factor receptor bindingPositive regulation of endothelial cell proliferationActivation of protein kinase activityRegulation of bone resorption 1.20.5.100 43 11 90 3.41 3.75
1s3jB01 79.48 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 6 68 2.82 4.14
1go9A00 79.45 1.20.5.480 39 10 84 2.65 3.15
1n2dC00 79.40 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 6 58 1.73 2.97
2hr3A01 79.26 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 6 68 2.51 3.68
1owaA01 79.02 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 9 63 2.66 4.18
1pp9E01 78.89 Cytochrome b-c1 complex subunit Rieske, mitochondrialBos taurus 1.20.5.270 64 15 60 2.11 3.46
1vf5C03 78.83 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 12 72 2.79 3.84
3b5nA00 78.75 Synaptobrevin homolog 1Vesicle fusionSNAP receptor activityPlasma membraneVesicle-associated membrane protein 4 1.20.5.110 61 9 70 2.44 3.46
1gl2D00 78.69 Syntaxin-8Rattus norvegicusProtein bindingSyntaxin 8SNARE interactions in vesicular transport 1.20.5.110 54 4 75 2.75 3.62
1kilE00 78.58 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 4 54 1.56 2.86
1jekA00 78.45 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 2 72 3.16 4.34
1g2cB00 78.19 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 5 65 2.85 4.32
1nhlA00 77.96 Vesicle targetingAzurophil granuleCellular membrane fusionSynaptosomal-associated protein 23Protein binding 1.20.5.110 52 2 59 2.59 4.34
1m56D00 77.96 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 7 61 2.05 3.34
1gl2C00 77.67 Mus musculusVesicle transport through interaction with t-SNAREs homolog 1BGolgi apparatusProtein binding 1.20.5.110 59 13 74 3.29 4.41
1l2pA00 77.50 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 4 59 2.61 4.42
1gl2B00 77.22 Mus musculusSyntaxin-7 1.20.5.110 59 2 74 2.94 3.94
1jmmA01 76.99 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 3 56 2.20 3.87
2oarE02 76.93 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 9 50 1.83 3.66
1h8bB00 76.88 TitinOryctolagus cuniculus 1.20.5.510 23 8 52 1.37 2.62
2zjsE00 76.84 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 6 60 2.23 3.66
1jthB00 76.80 Protein domain specific bindingMyosin head/neck bindingActomyosinRattus norvegicusProtein heterodimerization activity 1.20.5.110 67 15 65 3.06 4.66
3b5nJ00 76.34 Cellular membrane fusionSNARE complexPhosphatidylinositol-3,5-bisphosphate bindingSyntaxin 1B/2/3Prospore membrane 1.20.5.110 64 6 50 1.78 3.56
1svfC00 76.02 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 6 61 2.41 3.93
2r44A01 75.77 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 3 59 2.73 4.62
2o01J01 75.67 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 20 56 2.50 4.40
1be3K00 75.64 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 13 50 1.17 2.34
3clqB01 75.54 Enterococcus faecalisPutative uncharacterized protein 1.20.5.220 24 16 54 2.42 4.44
1t3jA00 75.54 Mus musculusMitochondrial fusionMitofusin-1Protein binding 1.20.5.110 62 6 53 2.50 4.70
3e7kA00 75.32 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 2 46 1.40 3.02
1ci6B00 75.05 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 0 59 2.59 4.35
3fwlA01 75.00 Peptidoglycan biosynthesisPenicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-]Penicillin bindingPenicillin-binding protein 1BPeptidoglycan biosynthetic process 1.20.5.100 31 0 45 0.75 1.65
2p1jA02 74.96 Thermotoga maritimaPyrimidine metabolismDNA replicationPurine metabolismMetabolic pathways 1.20.5.140 26 11 59 2.94 4.98
1hf9A00 73.78 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 7 45 1.24 2.73
1m7lA00 73.74 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 0 65 2.38 3.61
1vl2B03 73.26 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 6 68 3.25 4.77
1sfcH00 73.07 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 72 9 61 2.53 4.14
2b9bA04 72.85 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 2 40 1.87 4.64
1csbA01 71.46 Regulation of apoptosisLysosomeHomo sapiensCathepsin B [EC:3.4.22.1]Cathepsin B 1.20.5.170 42 2 52 2.26 4.32
1omiA02 71.04 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 0 36 0.65 1.79
2oarA02 70.89 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 5 38 0.94 2.43
2i8dA02 70.44 Hypothetical proteinLactobacillus casei ATCC 334Putative uncharacterized protein 1.20.5.420 30 3 36 0.61 1.68
1mslA02 70.39 1.20.5.220 18 11 40 1.32 3.23
1mqsB00 70.18 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 3 38 1.25 3.24
2pp6A01 69.45 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 47 2.04 4.27
1onvB00 68.23 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 9 47 2.29 4.80
3c8vA04 68.05 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 15 36 1.04 2.86
1d66B02 66.47 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 34 0.79 2.32
1mkmA02 59.50 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 27 0.70 2.57
[1]
Displaying entries 1 to 82 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1ppjD01
EHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPP
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1ppjD01
EHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPP
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:32

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"