CATH Domain: 1pnrA02 XML data for domain: 1pnrA02

Molscript image for 1pnrA02
1pnrA02
PDB coordinates for domain 1pnrA02

PDB 1pnr, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.2300 Gene3D
3.40.50.2300.53
3.40.50.2300.53.1
3.40.50.2300.53.1.1
3.40.50.2300.53.1.1.1
3.40.50.2300.53.1.1.1.8

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Segment boundaries for domain 1pnrA02

Chopping figure for domain 1pnrA02
DomainStart PDB ResidueStop PDB Residue
1pnrA01 3 59
1pnrA02 60 161
1pnrA02 292 323
1pnrA03 162 291
1pnrA03 324 340

Structural Neighbourhood (32 entries)

There are 32 matching structural neighberhood comparisons for CATH ID 3.40.50.2300.53.1.1.1.8 (SIMAX score < 5)

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Displaying entries 1 to 32 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fepA01 89.14 Bacillus subtilisCatabolite control protein ALacI family transcriptional regulator 3.40.50.2300 133 21 98 2.50 2.54
3bilA01 86.75 Corynebacterium glutamicumPROBABLE LACI-FAMILY TRANSCRIPTIONAL REGULATOR 3.40.50.2300 120 20 88 2.28 2.57
1bykA01 86.18 Specific transcriptional repressor activityLacI family transcriptional regulator, trehalose operon repressorSequence-specific DNA binding transcription factor activityTranscriptionHTH-type transcriptional regulator treR 3.40.50.2300 138 14 92 2.38 2.59
2qu7A01 86.01 Putative transcriptional regulatorStaphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3.40.50.2300 129 17 94 2.47 2.61
3clkB01 84.96 Lactobacillus plantarumTranscription regulator 3.40.50.2300 119 16 88 2.31 2.62
3cs3A01 83.20 Sugar-binding transcriptional regulator, LacI familyLacI family transcriptional regulatorEnterococcus faecalis 3.40.50.2300 122 13 85 3.72 4.33
3bblA01 83.18 Chloroflexus aggregans DSM 9485LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupGTranscriptional regulator, LacI family 3.40.50.2300 136 15 95 3.02 3.16
2rgyA01 83.16 LacI family transcriptional regulatorBurkholderia phymatum STM815Transcriptional regulator, LacI family 3.40.50.2300 122 13 86 3.02 3.49
3d8uB01 83.14 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 20 85 2.94 3.43
1gtzA00 82.07 Phenylalanine, tyrosine and tryptophan biosynthesis3-dehydroquinate dehydratase II [EC:4.2.1.10]Streptomyces coelicolor3-dehydroquinate dehydrataseMetabolic pathways 3.40.50.9100 149 10 78 2.68 3.41
2iksA01 81.43 LacI family transcriptional regulator, fructose operon transcriptional repressorFructose repressorEscherichia coli K-12 3.40.50.2300 95 22 67 2.85 4.24
2hqbA01 81.06 Transcriptional activator of comK geneTranscriptional activator of comK geneBacillus halodurans 3.40.50.2300 130 10 93 3.43 3.68
2q5cA01 80.05 Clostridium acetobutylicumNtrC family transcriptional regulator (PAS and AAA domains) 3.40.50.2300 97 13 68 2.81 4.09
1y7pB02 79.63 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.40.50.10550 137 8 82 3.23 3.92
3kg2B01 78.55 Rattus norvegicusGlutamate receptor 2Synaptic transmissionPerikaryonDendrite cytoplasm 3.40.50.2300 161 9 63 2.99 4.72
2zayA00 78.16 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 9 79 3.13 3.96
1a2oA01 78.16 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 6 82 3.03 3.69
1a04A01 78.16 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 11 79 2.96 3.74
2qzjA00 77.79 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 10 79 3.56 4.50
1srrC00 77.68 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 9 79 3.65 4.61
3bilA02 77.64 Corynebacterium glutamicumPROBABLE LACI-FAMILY TRANSCRIPTIONAL REGULATOR 3.40.50.2300 136 8 77 3.74 4.80
3cnbA00 77.56 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 6 78 3.23 4.12
1p2fA01 77.48 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 6 76 3.25 4.23
2b4aA00 77.35 BH3024 proteinBacillus halodurans 3.40.50.2300 116 7 78 3.58 4.57
2qsjB00 77.27 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 6 82 3.36 4.09
3b2nA00 77.19 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 7 76 3.15 4.14
2qxyA00 77.12 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 11 76 2.79 3.67
1bykA02 77.04 Specific transcriptional repressor activityLacI family transcriptional regulator, trehalose operon repressorSequence-specific DNA binding transcription factor activityTranscriptionHTH-type transcriptional regulator treR 3.40.50.2300 117 9 74 3.44 4.61
2qv0A00 76.79 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 5 82 3.60 4.39
1qo0D01 76.37 Pseudomonas aeruginosaAliphatic amidase regulator 3.40.50.2300 127 9 76 3.49 4.54
3d8uA02 75.83 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 144 7 72 3.54 4.90
3eq2B01 75.52 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 7 65 2.82 4.29
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Displaying entries 1 to 32 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pnrA02
KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRH
IPMVVMDWGEAKADFTDAVIDNQPKDSLGETAFNMLLDRIVNKREEPQSIEVHP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pnrA02
KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRH
IPMVVMDWGEAKADFTDAVIDNQPKDSLGETAFNMLLDRIVNKREEPQSIEVHP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:32

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"