CATH Domain: 1pnrA01 XML data for domain: 1pnrA01

Molscript image for 1pnrA01
1pnrA01
PDB coordinates for domain 1pnrA01

PDB 1pnr, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.260 434 Repressor (Amino-terminal Domain)
1.10.260.40 lambda repressor-like DNA-binding domains Gene3D
1.10.260.40.20
1.10.260.40.20.1
1.10.260.40.20.1.1
1.10.260.40.20.1.1.1
1.10.260.40.20.1.1.1.7

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Segment boundaries for domain 1pnrA01

Chopping figure for domain 1pnrA01
DomainStart PDB ResidueStop PDB Residue
1pnrA01 3 59
1pnrA02 60 161
1pnrA02 292 323
1pnrA03 162 291
1pnrA03 324 340

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 1.10.260.40.20.1.1.1.7 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1uxdA00 85.63 LacI family transcriptional regulator, fructose operon transcriptional repressorFructose repressorEscherichia coli K-12 1.10.260.40 59 36 93 4.54 4.87
2qm3A01 81.31 Pyrococcus furiosusPutative uncharacterized protein 1.10.10.10 81 17 61 2.25 3.65
3fe3A03 76.99 MAP/microtubule affinity-regulating kinase 3Homo sapiensProtein binding 1.10.8.10 42 11 63 3.00 4.75
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pnrA01
TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pnrA01
ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:32

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"