CATH Domain: 1pmhX00 XML data for domain: 1pmhX00

Molscript image for 1pmhX00
1pmhX00
PDB coordinates for domain 1pmhX00

PDB 1pmh, Chain X, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.260 Galactose-binding domain-like Gene3D
2.60.120.260.1
2.60.120.260.1.1
2.60.120.260.1.1.1
2.60.120.260.1.1.1.1
2.60.120.260.1.1.1.1.1

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Segment boundaries for domain 1pmhX00

Chopping figure for domain 1pmhX00
DomainStart PDB ResidueStop PDB Residue
1pmhX00 3 185

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 2.60.120.260.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1oh4A00 83.79 Thermotoga maritimaBeta-mannosidase 2.60.120.260 174 19 91 3.33 3.65
1uwwA00 80.99 Bacillus akibaiEndoglucanase 2.60.120.260 181 14 87 4.00 4.58
1hn0A01 78.17 Chondroitin ABC endolyase 1Proteus vulgaris 2.60.120.410 184 7 75 3.50 4.67
1h6yA00 76.94 Clostridium thermocellumEndo-1,4-beta-xylanase YProtein binding 2.60.120.260 157 7 79 3.76 4.76
3jxsA00 76.76 Rhodothermus marinusXylanase 2.60.120.260 166 12 82 3.86 4.69
1wmxA00 76.72 Clostridium thermocellumEndoglucanase J 2.60.120.360 173 12 80 3.49 4.33
1wcuA00 76.29 Piromyces equiNon-catalytic protein 1 2.60.120.360 149 10 70 3.34 4.72
1gwmA00 75.75 Piromyces equiNon-catalytic protein 1 2.60.120.360 153 9 70 3.16 4.50
2bbaA00 75.28 Cell surfaceIntegral to plasma membraneOrgan morphogenesisEph receptor B4 [EC:2.7.10.1]Homo sapiens 2.60.120.260 184 7 83 3.96 4.73
1i5pA01 74.87 Pesticidal crystal protein cry2AaBacillus thuringiensis serovar kurstaki 2.60.120.260 158 9 76 3.41 4.47
1gnyA00 74.32 Cellvibrio japonicusEndo-beta-1,4-xylanase 2.60.120.260 153 12 77 3.77 4.84
1gu3A00 73.84 Cellulomonas fimiEndoglucanase C 2.60.120.260 142 12 70 3.34 4.72
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pmhX00
SVNPVVLDFEDGTVSFGEAWGDSLKCIKKVSVSQDLQRPGNKYALRLDVEFNPNNGWDQGDLGTWIGGVVEGQFDFTGYK
SVEFEFIPYDEFSKSQGGFAYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHKAFAIPEDFRTKKRAQLVFQFAG
QNSNYKGPIYLDNVRIRPEDA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pmhX00
ESSVNPVVLDFEDGTVXSFGEAWGDSLKCIKKVSVSQDLQRPGNKYALRLDVEFNPNNGWDQGDLGTWIGGVVEGQFDFT
GYKSVEFEXFIPYDEFSKSQGGFAYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHKAFAIPEDFRTKKRAQLVF
QFAGQNSNYKGPIYLDNVRIRPEDA
BLAST against CATH

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Domain History Events (5)

Classification merge by cuff on 26 Apr 2006 15:49

COMMENT: Ali - HMM overlap and SSAP scores good, but evalue poor. Tempted to say that these are two different types of jellyroll but am not 100% sure. FINAL: lesley - They all have the same topology. Merge H-levels based on SCOP assignment. Alison, trace the connectivity of the strands and tell me what you think about their topological relationship. ADAM-I am not happy with these HMM hits. I think there are alot missing. Can you look into this and possibly run all the H-levels in 2.60.120 against each other please!

Flow stage update by cuff on 26 Apr 2006 15:49

COMMENT: Ali - HMM overlap and SSAP scores good, but evalue poor. Tempted to say that these are two different types of jellyroll but am not 100% sure. FINAL: lesley - They all have the same topology. Merge H-levels based on SCOP assignment. Alison, trace the connectivity of the strands and tell me what you think about their topological relationship. ADAM-I am not happy with these HMM hits. I think there are alot missing. Can you look into this and possibly run all the H-levels in 2.60.120 against each other please!

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:33

Cut based on decision in database "DomChop" on "cathdb"