CATH Domain: 1pkhB00 XML data for domain: 1pkhB00

Molscript image for 1pkhB00
1pkhB00
PDB coordinates for domain 1pkhB00

PDB 1pkh, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.70 Distorted Sandwich
2.70.40 Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A
2.70.40.10 Gene3D
2.70.40.10.6
2.70.40.10.6.1
2.70.40.10.6.1.1
2.70.40.10.6.1.1.1
2.70.40.10.6.1.1.1.1

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Segment boundaries for domain 1pkhB00

Chopping figure for domain 1pkhB00
DomainStart PDB ResidueStop PDB Residue
1pkhB00 1 175

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.70.40.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xs1A00 86.23 Pyrimidine metabolismMetabolic pathwaysDCTP deaminase activityDCTP deaminase [EC:3.5.4.13]Deoxycytidine triphosphate deaminase 2.70.40.10 193 29 78 1.42 1.80
2r9qA02 83.45 2.70.40.10 163 14 81 2.08 2.56
2r9qC01 82.80 2.70.40.10 163 20 82 3.40 4.10
2okbA00 76.74 Vaccinia virusDUTP pyrophosphatase 2.70.40.10 113 18 58 2.36 4.05
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pkhB00
MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN
YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR
IGQLIFSKLLSPADV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pkhB00
MILSDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKIN
YFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFKGKITLEIVAFDKPVILYKNQR
IGQLIFSKLLSPADV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:47

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:47

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:08

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"