CATH Domain: 1pk6A00 XML data for domain: 1pk6A00

Molscript image for 1pk6A00
1pk6A00
PDB coordinates for domain 1pk6A00

PDB 1pk6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.40 Gene3D
2.60.120.40.1
2.60.120.40.1.1
2.60.120.40.1.1.1
2.60.120.40.1.1.1.1
2.60.120.40.1.1.1.1.3

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Segment boundaries for domain 1pk6A00

Chopping figure for domain 1pk6A00
DomainStart PDB ResidueStop PDB Residue
1pk6A00 90 222

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.60.120.40.1.1.1.1.3 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o91A00 90.99 Mus musculusCamera-type eye morphogenesisCollagen alpha-1(VIII) chainEpithelial cell proliferationPositive regulation of cell-substrate adhesion 2.60.120.40 131 31 96 1.80 1.87
1rj8A00 84.42 Membrane fractionEctodysplasin-ACytoskeletonSignal transductionEctodysplasin-A 2.60.120.40 140 14 90 2.67 2.97
1xu1A00 84.08 Mus musculusImmunoglobulin production in mucosal tissueExternal side of plasma membranePositive regulation of germinal center formationTumor necrosis factor ligand superfamily member 13 2.60.120.40 137 10 93 2.98 3.19
1alyA00 83.60 Soluble fractionAutoimmune thyroid diseaseIntestinal immune network for IgA productionAllograft rejectionT cell receptor signaling pathway 2.60.120.40 146 19 86 2.36 2.71
2tnfA00 82.90 Regulation of immunoglobulin secretionType I diabetes mellitusEpithelial cell proliferation involved in salivary gland morphogenesisDilated cardiomyopathyTransformed cell apoptosis 2.60.120.40 148 13 84 2.82 3.34
1tnrA00 82.83 Lymphotoxin-alphaType I diabetes mellitusSignal transductionLymphotoxin alpha (TNF superfamily, member 1)Induction of apoptosis 2.60.120.40 144 16 82 2.67 3.23
2q8oA00 82.22 Mus musculusGITR ligand 2.60.120.40 125 12 81 2.81 3.43
1s55A00 82.19 Mammary gland epithelial cell proliferationOssificationOrgan morphogenesisLymph node developmentProtein homooligomerization 2.60.120.40 156 11 82 2.57 3.13
1w0nA00 74.56 Arabinoxylan arabinofuranohydrolasePaenibacillus polymyxa 2.60.120.260 120 8 72 3.42 4.74
1wmdA02 73.89 ProteaseBacillus sp. KSM-KP43 2.60.120.380 117 4 70 3.53 4.99
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pk6A00
QPRPAFSAIRRNPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCD
TTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pk6A00
QPRPAFSAIRRNPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCD
TTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"