CATH Domain: 1pjxA00 XML data for domain: 1pjxA00

Molscript image for 1pjxA00
1pjxA00
PDB coordinates for domain 1pjxA00

PDB 1pjx, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.120 6 Propellor
2.120.10 Neuraminidase
2.120.10.30 TolB, C-terminal domain Gene3D
2.120.10.30.1
2.120.10.30.1.1
2.120.10.30.1.1.1
2.120.10.30.1.1.1.1
2.120.10.30.1.1.1.1.1

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Segment boundaries for domain 1pjxA00

Chopping figure for domain 1pjxA00
DomainStart PDB ResidueStop PDB Residue
1pjxA00 1 314

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.120.10.30.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2p4oA01 82.05 Nostoc sp. PCC 7120All0351 protein 2.120.10.30 285 15 80 2.36 2.94
2ghsA00 81.57 Calcium-binding protein, regucalcinAgrobacterium tumefaciens str. C58 2.120.10.30 282 19 84 3.11 3.69
1npeA00 78.18 Mus musculusCell-matrix adhesionNidogen-1Collagen bindingBasement membrane 2.120.10.30 263 15 75 3.60 4.75
2qe8A00 78.13 Anabaena variabilis ATCC 29413Putative uncharacterized protein 2.120.10.30 327 11 80 3.83 4.78
1rwiA00 78.13 Serine/threonine protein kinase, bacterial [EC:2.7.11.1]Serine/threonine-protein kinase pknDMycobacterium tuberculosis 2.120.10.30 256 13 79 3.78 4.75
1v04A00 77.97 2.120.10.30 332 12 81 4.04 4.93
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pjxA00
MEIPVIEPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR
DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT
DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL
VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQYCETLKFGIF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pjxA00
MEIPVIEPLFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR
DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT
DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL
VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQYCETLKFGIF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"