CATH Domain: 1pgjA03 XML data for domain: 1pgjA03

Molscript image for 1pgjA03
1pgjA03
PDB coordinates for domain 1pgjA03

PDB 1pgj, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.320 6-Phosphogluconate Dehydrogenase, domain 3 Gene3D
1.20.5.320.4
1.20.5.320.4.1
1.20.5.320.4.1.1
1.20.5.320.4.1.1.1
1.20.5.320.4.1.1.1.1

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Segment boundaries for domain 1pgjA03

Chopping figure for domain 1pgjA03
DomainStart PDB ResidueStop PDB Residue
1pgjA01 1 186
1pgjA02 187 444
1pgjA03 445 478

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.20.5.320.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2g3aA01 70.49 Agrobacterium tumefaciens str. C58Acetyltransferase 1.20.5.540 31 6 52 2.43 4.59
1mkmA02 69.48 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 35 0.54 1.53
1dd4D01 69.38 Thermotoga maritima50S ribosomal protein L7/L12 1.20.5.710 30 16 38 0.56 1.46
1mqsB00 68.68 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 7 38 0.51 1.33
2qiwA02 68.11 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 38 0.80 2.09
2idbA03 67.06 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathways3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [EC:4.1.1.-]3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1.20.5.570 34 2 52 2.40 4.53
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pgjA03
YGQLVSLQRDVFGRHGYERVDKDGRESFQWPELQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pgjA03
YGQLVSLQRDVFGRHGYERVDKDGRESFQWPELQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:31

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"