CATH Domain: 1pfzB01 XML data for domain: 1pfzB01

Molscript image for 1pfzB01
1pfzB01
PDB coordinates for domain 1pfzB01

PDB 1pfz, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.13
2.40.70.10.13.1
2.40.70.10.13.1.1
2.40.70.10.13.1.1.1
2.40.70.10.13.1.1.1.1

[top]
Segment boundaries for domain 1pfzB01

Chopping figure for domain 1pfzB01
DomainStart PDB ResidueStop PDB Residue
1pfzB01 15 175
1pfzB02 176 327

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.40.70.10.13.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3psgA01 87.19 Sus scrofaPepsin A 2.40.70.10 165 30 87 1.59 1.81
1j71A01 83.89 Candida tropicalisCandidapepsin 2.40.70.10 173 27 81 2.29 2.81
1mppA01 83.78 Rhizomucor pusillusMucorpepsin 2.40.70.10 181 24 81 2.18 2.68
1b5fC00 80.94 Preprocardosin ACynara cardunculus 2.40.70.10 238 36 62 2.05 3.30
1lyaA00 76.70 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 97 32 48 1.79 3.70
1t6eX01 76.58 Triticum aestivumXylanase inhibitor 2.40.70.10 174 9 67 3.12 4.60
1fmbA00 73.85 Equine infectious anemia virus (clone CL22)Pol polyprotein 2.40.70.10 104 14 58 2.83 4.87
[1]
Displaying entries 1 to 7 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1pfzB01
MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMVSGFFSKDLVTVGNLSLPY
KFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEE
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1pfzB01
MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVG
NLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIE
E
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:31

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"