CATH Domain: 1pfbA00 XML data for domain: 1pfbA00

Molscript image for 1pfbA00
1pfbA00
PDB coordinates for domain 1pfbA00

PDB 1pfb, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.40 Gene3D
2.40.50.40.12
2.40.50.40.12.1
2.40.50.40.12.1.1
2.40.50.40.12.1.1.1
2.40.50.40.12.1.1.1.1

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Segment boundaries for domain 1pfbA00

Chopping figure for domain 1pfbA00
DomainStart PDB ResidueStop PDB Residue
1pfbA00 23 77

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.40.50.40.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1q3lA00 91.86 Chromatin bindingPositive regulation of transcription, DNA-dependentChromobox protein 5Drosophila melanogasterPolytene chromosome, telomeric region 2.40.50.40 52 53 94 1.12 1.18
2kvmA00 89.38 Mus musculusChromobox protein homolog 7Chromobox protein 7 2.40.50.40 71 56 77 0.94 1.21
1e0bA00 85.26 Chromatin silencing at telomereChromatin silencing at silent mating-type cassetteSister chromatid cohesionChromatin-associated protein swi6Protein binding 2.40.50.40 61 12 85 2.68 3.14
2rh2A00 82.39 Dihydrofolate reductase type 2Escherichia coli 2.30.30.60 57 7 77 2.52 3.26
1mhnA00 81.70 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 12 71 3.54 4.97
2heqA01 80.37 Bacillus subtilisSPBc2 prophage-derived uncharacterized protein yorP 2.30.30.40 54 12 70 2.20 3.10
1icwB00 77.75 Bladder cancerPathways in cancerChagas diseaseChemokine signaling pathwayCytokine-cytokine receptor interaction 2.40.50.40 66 7 72 3.55 4.88
1m1gB03 77.10 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 2.30.30.30 63 1 65 3.06 4.70
1mmdA01 76.64 ActomyosinMyosin II complexActin-myosin filament slidingProtein localizationActin filament binding 2.30.30.360 48 8 67 2.56 3.81
1uebA01 76.43 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.30.30.30 63 7 65 2.63 4.04
3i4oA00 75.28 Translation initiation factor IF-1Translation initiation factor IF-1Mycobacterium tuberculosis 2.40.50.140 68 5 57 2.41 4.20
1x6oA01 74.83 Translation initiation factor eIF-5AEukaryotic initiation factor 5a, putativeLeishmania braziliensis 2.30.30.30 64 9 65 3.24 4.94
1h9mA02 74.38 Azotobacter vinelandiiPotential molybdenum-pterin-binding-proteinMolybdate transport system regulatory protein 2.40.50.100 71 5 56 2.40 4.26
1m9sA05 73.08 Internalin BListeria monocytogenesProtein bindingInternalin B 2.30.30.170 78 10 52 2.04 3.88
1m9sA04 71.30 Internalin BListeria monocytogenesProtein bindingInternalin B 2.30.30.170 86 7 51 2.46 4.81
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pfbA00
DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pfbA00
DLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNILDRRLIDIYEQTNK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:49

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"