CATH Domain: 1pdnC02 XML data for domain: 1pdnC02

Molscript image for 1pdnC02
1pdnC02
PDB coordinates for domain 1pdnC02

PDB 1pdn, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.158
1.10.10.10.158.1
1.10.10.10.158.1.1
1.10.10.10.158.1.1.1
1.10.10.10.158.1.1.1.1

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Segment boundaries for domain 1pdnC02

Chopping figure for domain 1pdnC02
DomainStart PDB ResidueStop PDB Residue
1pdnC01 2 69
1pdnC02 70 124

Structural Neighbourhood (22 entries)

There are 22 matching structural neighberhood comparisons for CATH ID 1.10.10.10.158.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 22 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hcrA00 81.33 Salmonella enterica subsp. enterica serovar TyphimuriumDNA-invertase hin 1.10.10.60 52 11 74 3.38 4.53
1iv6A00 80.77 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 7 80 3.89 4.82
2hyjA01 80.36 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 15 72 2.91 4.00
1t56A01 79.93 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 6 69 2.49 3.60
3ccyA01 78.76 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 13 69 2.79 4.04
1hlvA01 78.71 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 58 12 63 2.04 3.20
2fq4A01 78.66 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 12 70 2.56 3.61
3f0cA01 78.26 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 6 63 2.26 3.55
3c2bA01 77.99 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 5 83 3.30 3.95
2ezhA00 77.78 TransposaseEnterobacteria phage Mu 1.10.10.60 65 9 78 3.57 4.55
3bqzA01 77.55 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 12 72 3.25 4.47
2id3A01 76.88 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 47 12 78 3.45 4.41
3dewA01 76.75 TetR/AcrR family transcriptional regulatorTranscriptional regulator, TetR familyGeobacter sulfurreducens 1.10.10.60 50 12 69 3.03 4.39
1fexA00 76.60 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 9 81 3.79 4.66
1s6lA01 76.00 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 1 60 2.53 4.22
2i10A01 75.99 Rhodococcus jostii RHA1Transcriptional regulator, TetR family protein 1.10.10.60 58 7 67 3.06 4.55
2vkvA01 75.75 Escherichia coliTetracycline repressor protein class DTetracycline repressor protein class B from transposon Tn10 1.10.10.60 61 9 65 3.22 4.91
1t33A01 74.68 Putative transcriptional repressor (TetR/AcrR family)Salmonella enterica subsp. enterica serovar Typhimurium 1.10.10.60 62 5 72 3.46 4.77
1hlvA02 74.14 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 60 12 83 3.85 4.62
1iufA02 73.60 Centromeric DNA bindingHistone modificationARS-binding protein 1Schizosaccharomyces pombeCondensed nuclear chromosome, centromeric region 1.10.10.60 64 7 79 3.96 4.97
1pveA00 72.29 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 1.10.10.540 72 3 73 3.40 4.62
2raeA01 71.84 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 4 69 3.22 4.66
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Displaying entries 1 to 22 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pdnC02
GSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pdnC02
GSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:31

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"