CATH Domain: 1pbyB00 XML data for domain: 1pbyB00

Molscript image for 1pbyB00
1pbyB00
PDB coordinates for domain 1pbyB00

PDB 1pby, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.130 7 Propellor
2.130.10 Methylamine Dehydrogenase; Chain H
2.130.10.10 YVTN repeat-like/Quinoprotein amine dehydrogenase Gene3D
2.130.10.10.5
2.130.10.10.5.1
2.130.10.10.5.1.1
2.130.10.10.5.1.1.1
2.130.10.10.5.1.1.1.1

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Segment boundaries for domain 1pbyB00

Chopping figure for domain 1pbyB00
DomainStart PDB ResidueStop PDB Residue
1pbyB00 1 337

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.130.10.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jmxB00 87.71 Pseudomonas putidaQuinohemoprotein amine dehydrogenase 40 kDa subunit 2.130.10.10 339 29 96 1.92 1.99
1l0qA01 79.73 Methanosarcina mazeiORF492 2.130.10.10 295 16 84 3.24 3.83
1ri6A00 79.66 Pentose phosphate pathwayMetabolic pathways6-phosphogluconolactonase [EC:3.1.1.31]6-phosphogluconolactonase activity6-phosphogluconolactonase 2.130.10.10 333 9 86 3.71 4.30
1nr0A02 77.56 Caenorhabditis elegansOvipositionLocomotionPositive regulation of locomotionNematode larval development 2.130.10.10 312 8 81 3.50 4.27
1mdaH00 75.99 2.130.10.10 368 8 79 3.44 4.35
1pguB02 75.89 Mating projection tipResponse to osmotic stressNucleusActin bindingActin filament depolymerization 2.130.10.10 323 8 81 3.67 4.50
2pbiB00 75.79 Mus musculusGuanine nucleotide-binding protein subunit beta-5Guanine nucleotide binding protein (G protein), beta 5Chemokine signaling pathwayNucleus 2.130.10.10 342 11 70 2.95 4.17
1p22A02 75.52 Ubiquitin-dependent protein catabolic processF-box/WD repeat-containing protein 1AHomo sapiensProtein bindingSignal transduction 2.130.10.10 295 8 73 3.49 4.74
1sq9A00 73.57 Identical protein bindingReciprocal meiotic recombinationNuclear-transcribed mRNA catabolic process, non-stop decayProtein-DNA complex assemblyRNA degradation 2.130.10.10 378 9 71 3.54 4.92
1pguB01 72.89 Mating projection tipResponse to osmotic stressNucleusActin bindingActin filament depolymerization 2.130.10.10 279 7 72 3.41 4.67
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1pbyB00
RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER
VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD
PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD
VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP
GNASMSLASVRLFTRDE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1pbyB00
RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER
VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD
PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD
VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP
GNASMSLASVRLFTRDE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"