CATH Domain: 1p5dX04 XML data for domain: 1p5dX04

Molscript image for 1p5dX04
1p5dX04
PDB coordinates for domain 1p5dX04

PDB 1p5d, Chain X, Domain 4

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.310 TATA-Binding Protein
3.30.310.50 Major birch pollen allergen Bet v 1 Gene3D
3.30.310.50.1
3.30.310.50.1.1
3.30.310.50.1.1.1
3.30.310.50.1.1.1.1
3.30.310.50.1.1.1.1.1

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Segment boundaries for domain 1p5dX04

Chopping figure for domain 1p5dX04
DomainStart PDB ResidueStop PDB Residue
1p5dX01 9 154
1p5dX02 174 251
1p5dX03 252 370
1p5dX04 371 463

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.30.310.50.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fuvA04 83.13 Amino sugar and nucleotide sugar metabolismGalactose metabolismMetabolic pathwaysStarch and sucrose metabolismPentose phosphate pathway 3.30.310.50 100 17 85 3.35 3.94
1tuoA04 80.72 Amino sugar and nucleotide sugar metabolismGalactose metabolismFructose and mannose metabolismMetabolic pathwaysStarch and sucrose metabolism 3.30.310.50 65 23 62 1.95 3.13
1kfiA04 78.09 Galactose metabolismAmino sugar and nucleotide sugar metabolismPhosphoglucomutase-1Metabolic pathwaysStarch and sucrose metabolism 3.30.310.50 125 15 70 3.10 4.40
2pgcA01 75.68 3.30.70.900 95 9 83 3.95 4.75
1lq9A00 73.65 Biosynthesis of type II polyketide productsStreptomyces coelicolorActVA 6 protein 3.30.70.900 112 11 73 3.59 4.90
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1p5dX04
ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRN
QLKAVDSSLPVPF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1p5dX04
ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRN
QLKAVDSSLPVPF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:29

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"