CATH Domain: 1p1mA02 XML data for domain: 1p1mA02

Molscript image for 1p1mA02
1p1mA02
PDB coordinates for domain 1p1mA02

PDB 1p1m, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.140 Metal-dependent hydrolases Gene3D
3.20.20.140.11
3.20.20.140.11.1
3.20.20.140.11.1.1
3.20.20.140.11.1.1.1
3.20.20.140.11.1.1.1.1

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Segment boundaries for domain 1p1mA02

Chopping figure for domain 1p1mA02
DomainStart PDB ResidueStop PDB Residue
1p1mA01 1 49
1p1mA01 331 384
1p1mA02 50 330

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.20.20.140.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2i9uA02 86.92 Cytosine/guanine deaminase related proteinGuanine deaminase [EC:3.5.4.3]Purine metabolismMetabolic pathwaysClostridium acetobutylicum 3.20.20.140 308 20 90 2.16 2.38
2pajA02 85.97 3.20.20.140 276 21 89 2.70 3.02
2oodA02 83.98 Bradyrhizobium japonicumGuanine deaminase [EC:3.5.4.3]Purine metabolismBlr3880 proteinMetabolic pathways 3.20.20.140 318 20 86 2.39 2.77
2qt3A02 81.81 N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP 3.20.20.140 301 13 87 2.78 3.17
3be7A02 79.48 3.20.20.140 295 9 80 3.46 4.33
3feqC02 79.07 3.20.20.140 299 12 78 2.78 3.55
2icsA02 77.30 Pyrimidine metabolismDihydroorotase [EC:3.5.2.3]Metabolic pathwaysEnterococcus faecalisPutative uncharacterized protein 3.20.20.140 260 10 79 3.64 4.61
2ogjA02 76.92 Pyrimidine metabolismAgrobacterium tumefaciens str. C58Dihydroorotase [EC:3.5.2.3]Metabolic pathwaysPutative uncharacterized protein 3.20.20.140 256 11 77 3.60 4.64
1zzmA00 75.71 Uncharacterized deoxyribonuclease yjjVTatD DNase family protein [EC:3.1.21.-]Escherichia coli K-12 3.20.20.140 259 9 80 3.66 4.57
1j6oA00 75.58 Thermotoga maritimaTatD DNase family protein [EC:3.1.21.-]Putative uncharacterized protein 3.20.20.140 259 11 81 3.82 4.71
3cjpA00 75.37 Predicted amidohodrolase (Dihydroorotase family)Clostridium acetobutylicum 3.20.20.140 260 12 76 3.46 4.50
1onwB02 74.52 Isoaspartyl dipeptidaseBeta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]Escherichia coli K-12 3.20.20.140 269 11 82 3.91 4.74
1v77A00 74.48 Pyrococcus horikoshiiRibonuclease P protein component 3Ribonuclease P subunit Rpp30 [EC:3.1.26.5] 3.20.20.140 202 4 66 3.24 4.89
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1p1mA02
ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFHEEWIAKAVRDFG
MRALLTRGLVDSNGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEY
DLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNL
FFEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1p1mA02
ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFHEEWIAKAVRDFG
MRALLTRGLVDSNGDDGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEY
DLEDILNIGLKEVKTIAAHCVHLPERYFGVLKDIPFFVSHNPASNLKLGNGIAPVQRMIEHGMKVTLGTDGAASNNSLNL
FFEMRLASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFKSG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:29

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"