CATH Domain: 1p1mA01 XML data for domain: 1p1mA01

Molscript image for 1p1mA01
1p1mA01
PDB coordinates for domain 1p1mA01

PDB 1p1m, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.40 Urease, subunit C; domain 1
2.30.40.10 Urease, subunit C, domain 1 Gene3D
2.30.40.10.4
2.30.40.10.4.1
2.30.40.10.4.1.1
2.30.40.10.4.1.1.1
2.30.40.10.4.1.1.1.1

[top]
Segment boundaries for domain 1p1mA01

Chopping figure for domain 1p1mA01
DomainStart PDB ResidueStop PDB Residue
1p1mA01 1 49
1p1mA01 331 384
1p1mA02 50 330

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.30.40.10.4.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2gwnA01 87.34 Pyrimidine metabolismDihydroorotaseDihydroorotase [EC:3.5.2.3]Porphyromonas gingivalisMetabolic pathways 2.30.40.10 96 28 79 1.98 2.49
1rk6A01 87.17 D-aminoacylaseAlcaligenes faecalis 2.30.40.10 87 20 77 2.04 2.63
1yrrA01 86.20 Amino sugar and nucleotide sugar metabolismEscherichia coli O157:H7N-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 19 76 2.00 2.61
3feqA01 86.04 2.30.40.10 105 21 85 2.34 2.73
2qs8A01 85.94 2.30.40.10 99 18 85 1.83 2.14
2qt3A01 85.90 N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP 2.30.40.10 100 21 85 2.27 2.66
2vhlB01 85.79 Amino sugar and nucleotide sugar metabolismN-acetylglucosamine-6-phosphate deacetylaseBacillus subtilisN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 20 78 2.38 3.03
2i9uA01 85.66 Cytosine/guanine deaminase related proteinGuanine deaminase [EC:3.5.4.3]Purine metabolismMetabolic pathwaysClostridium acetobutylicum 2.30.40.10 111 14 87 2.34 2.68
1gkrA01 85.27 L-hydantoinaseArthrobacter aurescens 2.30.40.10 87 25 75 2.03 2.68
2p9bA01 84.92 Possible prolidase (X-Pro dipeptidase) or chlorohydrolaseBifidobacterium longum 2.30.40.10 101 17 85 2.28 2.67
3be7A01 84.82 2.30.40.10 95 18 84 2.94 3.48
1o12A01 84.38 Amino sugar and nucleotide sugar metabolismThermotoga maritimaN-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 72 37 69 2.42 3.46
2pajA01 84.28 2.30.40.10 119 24 84 2.16 2.57
1gkpA01 83.25 HydrolaseThermus sp. 2.30.40.10 81 32 70 2.03 2.86
1kcxA01 81.09 Mus musculusDendriteDihydropyrimidinase-related protein 1Neuronal cell body 2.30.40.10 103 15 64 2.36 3.68
2oodA01 80.13 Bradyrhizobium japonicumGuanine deaminase [EC:3.5.4.3]Purine metabolismBlr3880 proteinMetabolic pathways 2.30.40.10 135 17 71 2.63 3.66
1ejxC01 75.30 Arginine and proline metabolismKlebsiella aerogenesPurine metabolismUrease alpha subunit [EC:3.5.1.5]Atrazine degradation 2.30.40.10 185 17 44 2.18 4.86
[1]
Displaying entries 1 to 17 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1p1mA01
MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNHLV
HAFSGEVFATMVAGKWIYFDGEY
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1p1mA01
MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGEVKVDLDLSGKLVMPKIEEGWNADLVVIDLDLPEMFPVQNIKNHLV
HAFSGEVFATMVAGKWIYFDGEY
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:22

Assigning to "2.30.40.10" based on similarity with "1j6pA01" (NWSI: 96.1165048543689, NWO: 89.5652173913043, SPS: 97.64, SPO: 97, RMSD: 0.23)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1p1mA01"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1p1mA01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1p1mA01"

Insertion by auto on 05 Mar 2006 17:29

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"