CATH Domain: 1ornA02 XML data for domain: 1ornA02

Molscript image for 1ornA02
1ornA02
PDB coordinates for domain 1ornA02

PDB 1orn, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.1670 Endonuclease Iii, domain 2
1.10.1670.10 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) Gene3D
1.10.1670.10.3
1.10.1670.10.3.1
1.10.1670.10.3.1.1
1.10.1670.10.3.1.1.1
1.10.1670.10.3.1.1.1.1

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Segment boundaries for domain 1ornA02

Chopping figure for domain 1ornA02
DomainStart PDB ResidueStop PDB Residue
1ornA01 22 133
1ornA02 2 21
1ornA02 134 213

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 1.10.1670.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1keaA01 87.00 G/T mismatches repair enzymeMethanothermobacter thermautotrophicus 1.10.1670.10 104 16 94 2.26 2.40
3g0qA01 85.66 Geobacillus stearothermophilusA/G-specific adenine glycosylase 1.10.1670.10 110 23 87 2.85 3.27
1kg2A01 84.30 Base excision repairA/G-specific adenine glycosylaseA/G-specific adenine glycosylase [EC:3.2.2.-]Escherichia coli K-12 1.10.1670.10 112 16 86 3.03 3.50
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ornA02
LTKQQIRYCLDEMAKMFPDAPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQS
PQCPSCPLLHLCREGKKRMR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ornA02
LTKQQIRYCLDEMAKMFPDAPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQS
PQCPSCPLLHLCREGKKRMR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:28

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"