CATH Domain: 1orfA02 XML data for domain: 1orfA02

Molscript image for 1orfA02
1orfA02
PDB coordinates for domain 1orfA02

PDB 1orf, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.74
2.40.10.10.74.1
2.40.10.10.74.1.1
2.40.10.10.74.1.1.1
2.40.10.10.74.1.1.1.1

[top]
Segment boundaries for domain 1orfA02

Chopping figure for domain 1orfA02
DomainStart PDB ResidueStop PDB Residue
1orfA01 16 27
1orfA01 121 232
1orfA02 28 120
1orfA02 233A 244

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.40.10.10.74.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3govB02 89.32 Serine-type endopeptidase activityCalcium ion bindingProtein homodimerization activityExtracellular spaceProtein binding 2.40.10.10 123 32 83 2.07 2.47
2pkaA00 84.19 Sus scrofaGlandular kallikrein 2.40.10.10 80 30 64 1.82 2.81
1ky9A01 82.00 Two-component systemSerine-type endopeptidase activityProtease doResponse to temperature stimulusProtein binding 2.40.10.10 88 17 77 3.25 4.21
2z9iC01 79.43 Two-component systemPutative serine protease PepD [EC:3.4.21.-]PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B)Mycobacterium tuberculosis 2.40.10.10 91 12 66 2.06 3.09
2hntC00 73.21 Serine-type endopeptidase activityFibrinolysisProthrombinSoluble fractionPositive regulation of protein phosphorylation 2.40.10.10 67 26 41 2.08 4.96
1befA02 72.70 2.40.10.10 85 4 62 3.14 5.00
[1]
Displaying entries 1 to 6 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1orfA02
PYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQL
TEKAKINKYVTIKKHLNWIIMTIKG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1orfA02
PYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQL
TEKAKINKYVTIKKHLNWIIMTIKGAV
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:28

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"