CATH Domain: 1oq1A00 XML data for domain: 1oq1A00

Molscript image for 1oq1A00
1oq1A00
PDB coordinates for domain 1oq1A00

PDB 1oq1, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.200 Gene3D
2.60.120.200.7
2.60.120.200.7.1
2.60.120.200.7.1.1
2.60.120.200.7.1.1.1
2.60.120.200.7.1.1.1.1

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Segment boundaries for domain 1oq1A00

Chopping figure for domain 1oq1A00
DomainStart PDB ResidueStop PDB Residue
1oq1A00 -2 220

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.60.120.200.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ux6A02 78.37 ECM-receptor interactionPositive regulation of tumor necrosis factor biosynthetic processPositive regulation of angiogenesisProteoglycan bindingNegative regulation of caspase activity 2.60.120.200 208 5 71 2.99 4.20
1n1tA02 75.43 Trypanosoma rangeliSialidase 2.60.120.200 202 8 78 3.69 4.72
1kjlA00 73.46 Galectin-3NucleusPlasma membraneGalectin-3Mitochondrial inner membrane 2.60.120.200 138 13 59 2.60 4.37
1is3A00 71.44 Congerin-2Conger myriaster 2.60.120.200 133 9 58 2.77 4.76
1w6nB00 70.56 Galectin-1Positive regulation of I-kappaB kinase/NF-kappaB cascadeCytoplasmSignal transducer activityApoptosis 2.60.120.200 134 8 58 2.78 4.78
1hlcA00 70.09 Galectin-2Homo sapiensGalectin-2 2.60.120.200 129 7 57 2.81 4.91
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1oq1A00
SNAYKEGACLYRNPLRSKSDVKDWREGGGQISFDDHSLHLSHVQDEAHFVFWCPETFPDGIIVTWDFSPIEQPGLCLFFA
AAGIRGEDLFDPSLRKRTGTYPEYHSGDINALHLSYFRRKYAEERAFRTCNLRKSRGFHLAAGADPLPSPDDADSPYRKL
IKDKGYVHFSINGLPILEWDDGSTYGPVLTKGKIGFRQAPKAVYRDFAVHQAVRR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1oq1A00
SNAXYKEGACLYRNPLRSKSDVKDWRXEGGGQISFDDHSLHLSHVQDEAHFVFWCPETFPDGIIVTWDFSPIEQPGLCXL
FFAAAGIRGEDLFDPSLRKRTGTYPEYHSGDINALHLSYFRRKYAEERAFRTCNLRKSRGFHLAAXGADPLPSPDDADSP
YRXKLIKDKGYVHFSINGLPILEWXDDGSTYGPVLTKGKIGFRQXAPXKAVYRDFAVHQAVRR
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:31

Cut based on decision in database "DomChop" on "cathdb"