CATH Domain: 1opzA00 XML data for domain: 1opzA00

Molscript image for 1opzA00
1opzA00
PDB coordinates for domain 1opzA00

PDB 1opz, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.13
3.30.70.100.13.1
3.30.70.100.13.1.1
3.30.70.100.13.1.1.1
3.30.70.100.13.1.1.1.1

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Segment boundaries for domain 1opzA00

Chopping figure for domain 1opzA00
DomainStart PDB ResidueStop PDB Residue
1opzA00 1 76

Structural Neighbourhood (74 entries)

There are 74 matching structural neighberhood comparisons for CATH ID 3.30.70.100.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 74 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yjrA00 89.07 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 32 97 1.63 1.67
1mwyA00 86.06 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 31 93 2.07 2.22
2ofhX00 86.02 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 40 93 1.86 1.99
2g9oA00 85.64 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 22 94 2.37 2.50
2kt2A00 84.86 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 27 90 1.89 2.08
1y3jA00 83.26 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 77 32 94 2.22 2.34
2x3dF01 82.54 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 9 84 2.74 3.24
1harA02 80.90 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 8 85 2.78 3.25
2nyiA01 80.24 3.30.70.260 77 11 89 3.39 3.78
2dy1A03 80.11 Thermus thermophilus HB8Elongation factor EF-G [EC:3.6.5.3]Elongation factor G (EF-G-2) 3.30.70.870 76 14 96 4.37 4.55
1in0A01 80.11 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 12 85 2.97 3.47
1i1gA02 79.50 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 10 88 3.44 3.90
2pgcA01 78.59 3.30.70.900 95 13 77 3.36 4.31
1vr6A01 78.57 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 8 88 3.19 3.62
1fjeB01 78.55 NucleolinMesocricetus auratus 3.30.70.330 81 11 87 3.75 4.28
1mw7A03 78.38 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 8 90 3.81 4.20
1mlaA01 78.29 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 6 88 3.89 4.41
2wriY03 78.20 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 3 94 4.22 4.45
2w25A02 78.02 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 6 85 3.85 4.52
3c19A01 77.98 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 9 74 3.23 4.34
1utaA00 77.82 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 6 93 3.62 3.87
1q8bA00 77.74 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 9 77 3.43 4.42
2ivyA01 77.72 Sulfolobus solfataricusPutative uncharacterized protein 3.30.70.240 74 5 80 3.52 4.39
1cvjA01 77.65 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 5 85 3.34 3.90
2do0A01 77.64 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 7 90 3.48 3.83
1nzaA00 77.57 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 13 66 2.71 4.10
2j8sA03 77.46 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 17 74 3.48 4.70
1lfwA03 77.38 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 88 2 69 3.40 4.90
1q5yD00 77.36 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 3 85 4.14 4.87
1fxlA01 77.32 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 5 82 3.14 3.79
2fb0A00 77.27 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 9 79 3.44 4.35
1l3kA02 77.14 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 7 89 3.63 4.04
2ia0B02 77.02 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 14 74 3.71 4.96
1l6rA02 77.01 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.90.1070.10 63 9 76 3.58 4.69
1l3kA01 76.97 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 10 83 3.43 4.12
1wr8A02 76.96 Pyrococcus horikoshiiPhosphoglycolate phosphatase 3.90.1070.10 69 5 75 3.46 4.61
1o8bA02 76.95 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 10 82 3.69 4.45
1no8A00 76.85 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 10 85 3.59 4.18
2rilA00 76.77 Antibiotic biosynthesis monooxygenaseShewanella loihica PV-4 3.30.70.900 91 7 81 3.96 4.87
2errA01 76.77 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 7 83 3.10 3.73
1s99A01 76.73 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 5 87 3.71 4.26
1xtzA02 76.64 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 6 82 3.95 4.81
1u8sA01 76.63 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 7 82 3.22 3.90
2qfjA02 76.59 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 9 78 3.29 4.21
2pd1A01 76.58 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 10 79 3.76 4.73
2nuhA00 76.52 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 10 66 3.03 4.57
1fxlA02 76.50 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 10 84 3.40 4.03
2nyiA02 76.45 3.30.70.260 89 10 80 3.58 4.43
1zpvB00 76.31 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 9 86 4.23 4.89
1x5oA01 76.30 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 3 80 3.49 4.35
1u0sA00 76.30 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 10 86 4.20 4.88
1sqgA03 76.29 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 6 75 3.70 4.93
1eayD00 76.05 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 10 85 4.02 4.70
1d1rA00 75.98 Translation initiation factor SUI1Uncharacterized protein yciHEscherichia coli K-12 3.30.780.10 83 11 81 3.89 4.75
1x5uA01 75.91 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 9 88 3.96 4.46
1s99A02 75.76 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 3 83 4.17 4.97
2i0xA01 75.75 Pyrococcus furiosusPutative uncharacterized protein 3.30.70.240 66 10 78 3.76 4.76
1iujB00 75.61 TT1380 proteinThermus thermophilus 3.30.70.900 103 13 68 3.36 4.87
2hfvA01 75.50 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 9 80 3.74 4.64
2od4B01 75.44 3.30.70.900 81 9 87 3.77 4.30
1b7yB06 75.36 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 9 77 3.00 3.85
1nm2A01 75.24 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 8 82 3.60 4.34
1ufwA00 75.16 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 9 76 3.62 4.71
2u2fA00 74.97 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 9 82 3.86 4.69
1nu4A00 74.91 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 91 11 81 4.04 4.97
1lfwA02 74.90 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 14 66 3.19 4.83
2gx8C02 74.66 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 10 68 3.08 4.49
2bopA00 74.60 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 3 80 3.97 4.96
1nh8A03 74.57 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 5 77 3.54 4.56
1uw4A00 74.51 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 6 76 3.65 4.76
3cj8B02 74.31 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]Lysine biosynthesisMetabolic pathwaysEnterococcus faecalis 3.30.70.250 66 7 76 3.32 4.35
2j8sA06 73.60 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 7 65 3.10 4.72
1vgyA02 73.37 Succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]Neisseria meningitidis serogroup BLysine biosynthesisMetabolic pathwaysSuccinyl-diaminopimelate desuccinylase 3.30.70.360 114 13 64 3.14 4.84
1uv7A00 71.75 Vibrio choleraeGeneral secretion pathway protein M 3.30.1360.100 74 9 75 3.21 4.28
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Displaying entries 1 to 74 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1opzA00
MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIEGR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1opzA00
MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIEGR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"