CATH Domain: 1omrA02 XML data for domain: 1omrA02

Molscript image for 1omrA02
1omrA02
PDB coordinates for domain 1omrA02

PDB 1omr, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.9
1.10.238.10.9.1
1.10.238.10.9.1.1
1.10.238.10.9.1.1.1
1.10.238.10.9.1.1.1.1

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Segment boundaries for domain 1omrA02

Chopping figure for domain 1omrA02
DomainStart PDB ResidueStop PDB Residue
1omrA01 12 97
1omrA02 102 189

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.10.238.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1g8iB02 89.59 Calcium ion bindingNeuronal calcium sensor 1Homo sapiensProtein binding 1.10.238.10 91 45 94 3.54 3.75
1eg3A04 83.76 Cell surfaceCostamereCytoskeletonDystrophin-associated glycoprotein complexActin binding 1.10.238.10 82 8 86 2.74 3.17
1exrA02 83.72 Phosphatidylinositol signaling systemCalmodulinParamecium tetraureliaCalmodulin 1.10.238.10 67 22 69 2.65 3.82
2f3yA02 83.37 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 22 70 2.85 4.05
1topA02 83.30 Gallus gallusTroponin C, skeletal muscle 1.10.238.10 87 18 73 2.83 3.83
1qtxA02 83.19 1.10.238.10 68 23 70 2.76 3.92
1fi5A00 81.38 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 81 17 73 2.92 3.95
1dtlA02 80.91 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 63 22 67 2.57 3.83
1wrkA00 79.41 Cardiac muscle contractionCalcium signaling pathwayDilated cardiomyopathyHypertrophic cardiomyopathy (HCM)Calcium ion binding 1.10.238.10 82 10 73 3.28 4.44
1jfjA01 78.52 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 22 70 2.82 4.00
1tizA00 77.68 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 16 72 3.29 4.52
2os8B01 77.36 Myosin regulatory light chainPlacopecten magellanicus 1.10.238.10 65 13 68 2.88 4.22
1jfjA02 76.01 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 71 28 65 2.58 3.91
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1omrA02
LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKE
ILRLIQFE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1omrA02
LEWAFSLYDVDGNGTISKNEVLEIVTAIFKMISPEDTKHLPEDENTPEKRAEKIWGFFGKKDDDKLTEKEFIEGTLANKE
ILRLIQFE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"