CATH Domain: 1omrA01 XML data for domain: 1omrA01

Molscript image for 1omrA01
1omrA01
PDB coordinates for domain 1omrA01

PDB 1omr, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.10
1.10.238.10.10.1
1.10.238.10.10.1.1
1.10.238.10.10.1.1.1
1.10.238.10.10.1.1.1.1

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Segment boundaries for domain 1omrA01

Chopping figure for domain 1omrA01
DomainStart PDB ResidueStop PDB Residue
1omrA01 12 97
1omrA02 102 189

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 1.10.238.10.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jfjA01 82.25 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 20 70 2.33 3.28
1ncxA01 81.32 Gallus gallusTroponin C, skeletal muscle 1.10.238.10 90 16 94 4.31 4.56
1wrkA00 81.02 Cardiac muscle contractionCalcium signaling pathwayDilated cardiomyopathyHypertrophic cardiomyopathy (HCM)Calcium ion binding 1.10.238.10 82 17 91 3.75 4.08
1tizA00 79.66 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 15 76 3.64 4.74
1ggzA01 79.61 Calcium ion bindingOlfactory transductionCalcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathway 1.10.238.10 76 21 84 4.24 5.00
1eg3A04 79.47 Cell surfaceCostamereCytoskeletonDystrophin-associated glycoprotein complexActin binding 1.10.238.10 82 2 73 2.87 3.92
1g4yR01 79.28 Calcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathwayOocyte meiosisGnRH signaling pathway 1.10.238.10 80 22 89 4.20 4.69
1qasA01 78.89 Calcium ion bindingPhosphatidylinositol signaling systemCalcium signaling pathwayRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 88 6 84 4.00 4.76
1qx2A00 78.48 Protein S100-GBos taurus 1.10.238.10 75 14 81 4.00 4.91
1exrA02 78.36 Phosphatidylinositol signaling systemCalmodulinParamecium tetraureliaCalmodulin 1.10.238.10 67 14 75 3.67 4.86
1qtxA02 78.18 1.10.238.10 68 14 75 3.61 4.78
1djxB01 78.17 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 17 60 2.83 4.68
2f3yA02 77.84 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 16 73 3.57 4.87
1k90E01 77.68 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 21 82 4.02 4.87
1s26D01 76.85 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 23 68 3.20 4.66
1qjtA00 75.55 Mus musculusEpidermal growth factor receptor substrate 15 1.10.238.10 99 10 75 3.78 4.99
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1omrA01
EILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALH
MTSAGK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1omrA01
EILEELQLNTKFTEEELSSWYQSFLKECPSGRITRQEFQTIYSKFFPEADPKAYAQHVFRSFDANSDGTLDFKEYVIALH
MTSAGK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"