CATH Domain: 1okiA01 XML data for domain: 1okiA01

Molscript image for 1okiA01
1okiA01
PDB coordinates for domain 1okiA01

PDB 1oki, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.20 Gamma-B Crystallin; domain 1
2.60.20.10 Crystallins Gene3D
2.60.20.10.3
2.60.20.10.3.1
2.60.20.10.3.1.1
2.60.20.10.3.1.1.1
2.60.20.10.3.1.1.1.1

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Segment boundaries for domain 1okiA01

Chopping figure for domain 1okiA01
DomainStart PDB ResidueStop PDB Residue
1okiA01 54 144
1okiA02 145 236

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.60.20.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ytqA01 94.46 Beta-crystallin B2Visual perceptionHomo sapiens 2.60.20.10 86 51 94 0.91 0.96
2bv2A00 92.04 2.60.20.10 83 33 88 1.29 1.45
1okiA02 91.98 Beta-crystallin B1Visual perceptionHomo sapiens 2.60.20.10 92 30 94 1.88 1.99
1hdfA00 86.76 Spherulin-3APhysarum polycephalum 2.60.20.10 99 18 85 3.57 4.16
1npsA00 86.22 Myxococcus xanthusDevelopment-specific protein S 2.60.20.10 87 17 88 2.35 2.64
3hzbC00 85.20 Predicted carbohydrate binding proteinFlavobacterium johnsoniae UW101 2.60.20.10 88 14 90 2.76 3.07
1c01A00 79.06 Macadamia integrifoliaAntimicrobial peptide 1 2.60.20.30 76 10 77 2.37 3.05
1wktA00 78.85 Killer toxin HM-1Williopsis saturnus var. mrakii 2.60.20.20 87 11 82 3.87 4.71
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1okiA01
PPGNYRLVVFELENFQGRRAEFSGESNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDR
LMSFRPIKMD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1okiA01
TVPITSAKAAELPPGNYRLVVFELENFQGRRAEFSGEXSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGEYP
RWNTWSSSYRSDRLMSFRPIKMD
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:31

Cut based on decision in database "DomChop" on "cathdb"