CATH Domain: 1oiaB00 XML data for domain: 1oiaB00

Molscript image for 1oiaB00
1oiaB00
PDB coordinates for domain 1oiaB00

PDB 1oia, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.17
3.30.70.330.17.1
3.30.70.330.17.1.1
3.30.70.330.17.1.1.1
3.30.70.330.17.1.1.1.2

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Segment boundaries for domain 1oiaB00

Chopping figure for domain 1oiaB00
DomainStart PDB ResidueStop PDB Residue
1oiaB00 6 91

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.30.70.330.17.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cvjA01 89.94 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 31 82 1.89 2.30
2do0A01 88.57 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 25 82 1.86 2.26
1x5uA01 88.54 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 26 85 2.15 2.51
3feyB00 88.02 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 22 87 2.98 3.40
1jmtA00 86.25 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 16 81 2.18 2.67
1x5oA01 86.22 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 16 84 2.20 2.61
1no8A00 85.47 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 24 84 2.68 3.17
1d8zA00 85.25 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 17 92 4.18 4.53
1sjqA00 85.18 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 15 90 2.75 3.06
1ufwA00 84.43 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 16 86 4.10 4.75
2errA01 84.17 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 20 91 3.59 3.94
1fjeB01 83.88 NucleolinMesocricetus auratus 3.30.70.330 81 19 88 3.44 3.87
2u2fA00 83.41 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 16 88 4.06 4.57
1sjrA00 83.12 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 24 76 3.16 4.11
2u1aA00 82.68 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 27 90 3.75 4.17
1sxlA00 80.69 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 22 88 3.11 3.51
1qm9A01 78.84 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 20 82 3.65 4.42
2rilA00 78.71 Antibiotic biosynthesis monooxygenaseShewanella loihica PV-4 3.30.70.900 91 10 93 4.62 4.95
2od4B01 78.58 3.30.70.900 81 4 81 3.80 4.68
1in0A01 78.48 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 10 77 3.27 4.20
3bf4A01 78.23 Ralstonia eutropha JMP134Ethyl tert-butyl ether degradation EthD 3.30.70.900 92 6 80 3.82 4.75
2rhsD06 77.87 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 7 80 3.65 4.56
1l2mA00 77.24 Tomato yellow leaf curl Sardinia virusReplication-associated protein 3.40.1310.20 118 14 71 3.18 4.47
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Displaying entries 1 to 23 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1oiaB00
TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ
YAKTDS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1oiaB00
MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK
PMRIQYAKTDSDIIA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"