CATH Domain: 1oi7A02 XML data for domain: 1oi7A02

Molscript image for 1oi7A02
1oi7A02
PDB coordinates for domain 1oi7A02

PDB 1oi7, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.261 Gene3D
3.40.50.261.1
3.40.50.261.1.1
3.40.50.261.1.1.1
3.40.50.261.1.1.1.1
3.40.50.261.1.1.1.1.1

Segment boundaries for domain 1oi7A02

Chopping figure for domain 1oi7A02
DomainStart PDB ResidueStop PDB Residue
1oi7A01 1 122
1oi7A02 123 287

Structural Neighbourhood (57 entries)

There are 57 matching structural neighberhood comparisons for CATH ID 3.40.50.261.1.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 57 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fp4B03 84.38 Sus scrofaSuccinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial 3.40.50.261 146 12 88 2.68 3.03
3b2nA00 80.89 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 12 76 3.12 4.09
3gl9B00 80.26 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 13 74 3.05 4.08
1qkkA00 80.19 Sinorhizobium melilotiTwo-component systemTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctDC4-dicarboxylate transport transcriptional regulatory protein dctD 3.40.50.2300 139 10 73 3.01 4.10
1a2oA01 80.19 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 12 79 3.49 4.38
1mb3A00 80.03 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 14 70 2.71 3.83
1ccwA00 79.95 Methylaspartate mutase S chainClostridium cochlearium 3.40.50.280 137 10 79 3.52 4.42
2jbaA00 79.93 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 13 76 3.68 4.83
1zgzA00 79.93 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 10 74 3.06 4.09
1k68A00 79.89 Tolypothrix sp. PCC 7601Response regulator 3.40.50.2300 139 10 77 3.42 4.41
1jyeA01 79.80 Lactose operon repressorProtein bindingEscherichia coli K-12Cytosol 3.40.50.2300 130 6 72 3.09 4.29
3ctpA01 79.77 Alkaliphilus metalliredigens QYMFPeriplasmic binding protein/LacI transcriptional regulator 3.40.50.2300 128 10 68 2.59 3.77
3gt7A00 79.66 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 14 75 3.28 4.34
1ys7A01 79.57 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 17 74 3.31 4.46
2r25B00 79.55 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 7 80 3.57 4.45
3bilA01 79.53 Corynebacterium glutamicumPROBABLE LACI-FAMILY TRANSCRIPTIONAL REGULATOR 3.40.50.2300 120 18 69 2.92 4.21
3bulA02 79.51 One carbon pool by folateMetabolic pathwaysCysteine and methionine metabolismEscherichia coli K-12Methionine synthase activity 3.40.50.280 153 8 77 3.66 4.71
1ny5A01 79.50 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 3.40.50.2300 136 12 75 3.06 4.05
2driA01 79.34 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 11 72 2.90 4.02
2qzjA00 79.31 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 10 74 3.24 4.33
1srrC00 79.26 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 17 76 3.40 4.42
3cnbA00 79.17 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 12 76 3.09 4.06
2fvyA01 79.10 Bacterial chemotaxisABC transportersMethyl-galactoside transport system substrate-binding proteinD-galactose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 147 10 72 2.59 3.56
2fepA01 79.07 Bacillus subtilisCatabolite control protein ALacI family transcriptional regulator 3.40.50.2300 133 12 71 2.74 3.84
2qv0A00 78.99 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 11 74 3.25 4.34
1a04A01 78.88 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 10 77 3.39 4.37
1dbwB00 78.86 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 12 77 3.64 4.69
1p2fA01 78.80 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 15 72 3.52 4.88
2jk1A00 78.75 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 9 74 3.04 4.10
2qr3A00 78.69 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 14 76 3.06 4.02
3cz5B00 78.64 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 9 77 3.48 4.49
2ohhA02 78.57 Type A flavoprotein fprAMethanothermobacter marburgensis str. Marburg 3.40.50.360 144 9 76 3.61 4.70
1dbqA01 78.50 LacI family transcriptional regulator, purine nucleotide synthesis repressorHTH-type transcriptional repressor purREscherichia coli K-12 3.40.50.2300 134 6 72 2.92 4.01
2qvgA00 78.47 Two component response regulator[EC:2.7.3.-]Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.50.2300 126 7 75 3.17 4.20
2qsjB00 78.03 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 17 72 3.43 4.71
2zayA00 78.01 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 11 76 3.19 4.19
3c3kB01 77.95 Actinobacillus succinogenes 130ZAlanine racemase 3.40.50.2300 134 6 71 2.98 4.17
1bykA01 77.90 Specific transcriptional repressor activityLacI family transcriptional regulator, trehalose operon repressorSequence-specific DNA binding transcription factor activityTranscriptionHTH-type transcriptional regulator treR 3.40.50.2300 138 9 69 3.34 4.81
2h3hA01 77.84 Thermotoga maritimaSugar ABC transporter, periplasmic sugar-binding proteinSimple sugar transport system substrate-binding protein 3.40.50.2300 148 10 72 2.80 3.87
2qxyA00 77.76 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 12 75 3.10 4.11
3d8uB01 77.61 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 17 70 3.32 4.69
2qu7A01 77.53 Putative transcriptional regulatorStaphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3.40.50.2300 129 10 71 3.40 4.76
3bblA01 77.15 Chloroflexus aggregans DSM 9485LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupGTranscriptional regulator, LacI family 3.40.50.2300 136 8 72 3.32 4.60
2hqbA01 77.13 Transcriptional activator of comK geneTranscriptional activator of comK geneBacillus halodurans 3.40.50.2300 130 10 70 2.79 3.98
3cu5B00 77.04 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 10 76 3.65 4.79
3crnA00 76.97 Response regulator receiver domain protein (CheY-like)Methanospirillum hungatei JF-1 3.40.50.2300 118 9 68 3.37 4.95
1f4pA00 76.95 Desulfovibrio vulgaris str. HildenboroughFlavodoxin 3.40.50.360 147 9 74 3.66 4.89
3brsA01 76.88 Ribose transport system substrate-binding proteinBacterial chemotaxisPeriplasmic binding protein/LacI transcriptional regulatorClostridium phytofermentans ISDgABC transporters 3.40.50.2300 136 9 73 3.11 4.23
1gudA01 76.81 ABC transportersMembraneD-allose transport system substrate-binding proteinD-allose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 139 5 74 3.22 4.30
8abpA01 76.39 ABC transportersL-arabinose-binding periplasmic proteinL-arabinose transport system substrate-binding proteinEscherichia coli K-12 3.40.50.2300 138 7 72 2.93 4.06
3clkB01 76.30 Lactobacillus plantarumTranscription regulator 3.40.50.2300 119 8 64 2.63 4.07
1yl5A01 76.27 Metabolic pathwaysLysine biosynthesisDihydrodipicolinate reductase [EC:1.3.1.26]Dihydrodipicolinate reductaseMycobacterium tuberculosis 3.40.50.720 140 10 69 3.35 4.83
1z0sA01 75.99 Archaeoglobus fulgidusProbable inorganic polyphosphate/ATP-NAD kinaseNAD+ kinase [EC:2.7.1.23]Nicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.10330 123 10 61 3.09 4.99
1reqA02 75.87 Propionibacterium freudenreichii subsp. shermaniiMethylmalonyl-CoA mutase large subunit 3.40.50.280 164 9 73 3.60 4.88
1dxyA01 75.37 Lactobacillus paracaseiD-2-hydroxyisocaproate dehydrogenase 3.40.50.720 133 6 67 3.22 4.78
3lftB01 75.11 Putative ABC transport system substrate-binding proteinStreptococcus pneumoniaePutative uncharacterized protein 3.40.50.2300 134 9 70 3.35 4.74
1j4aD01 73.85 D-lactate dehydrogenase [EC:1.1.1.28]D-lactate dehydrogenasePyruvate metabolismLactobacillus delbrueckii subsp. bulgaricus ATCC 11842 3.40.50.720 135 5 68 3.30 4.85
Displaying entries 1 to 57 (page 1 of 1)


Domain ATOM Sequence

>pdb|1oi7A02
CPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEA
VVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL    

Domain COMBS Sequence

>pdb|1oi7A02
CPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEA
VVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVEL
VKKAL    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"