CATH Domain: 1ohtA00 XML data for domain: 1ohtA00

Molscript image for 1ohtA00
1ohtA00
PDB coordinates for domain 1ohtA00

PDB 1oht, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.80 Lysozyme-like
3.40.80.10 Lysozyme Gene3D
3.40.80.10.1
3.40.80.10.1.1
3.40.80.10.1.1.1
3.40.80.10.1.1.1.1
3.40.80.10.1.1.1.1.1

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Segment boundaries for domain 1ohtA00

Chopping figure for domain 1ohtA00
DomainStart PDB ResidueStop PDB Residue
1ohtA00 12 185

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.80.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1s2jA00 93.21 Positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteriaPeptidoglycan receptor activityResponse to peptidoglycanPeptidoglycan-recognition protein SAExtracellular region 3.40.80.10 169 35 97 1.75 1.80
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ohtA00
TARLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYPAVCYSTPDCKSRDQDFHQLERGWNDIGYSFGIGGDGIYTGRGFNV
IGAHAPKYNDKSVGIVLIGDWRTELPPKQLDAAKNLIAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHFTH
INDTEGVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ohtA00
XQQANLGDGVATARLLSRSDWGARLPKSVEHFQGPAPYVIIHHSYXPAVCYSTPDCXKSXRDXQDFHQLERGWNDIGYSF
GIGGDGXIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQXLDAAKNLIAFGVFKGYIDPAYKLLGHRQVRDTEC
PGGRLFAEISSWPHFTHINDTEGVS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:46

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"