CATH Domain: 1oflA00 XML data for domain: 1oflA00

Molscript image for 1oflA00
1oflA00
PDB coordinates for domain 1oflA00

PDB 1ofl, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.160 3 Solenoid
2.160.20 Pectate Lyase C-like
2.160.20.10 Single-stranded right-handed beta-helix, Pectin lyase-like Gene3D
2.160.20.10.17
2.160.20.10.17.1
2.160.20.10.17.1.1
2.160.20.10.17.1.1.1
2.160.20.10.17.1.1.1.1

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Segment boundaries for domain 1oflA00

Chopping figure for domain 1oflA00
DomainStart PDB ResidueStop PDB Residue
1oflA00 27 506

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1oflA00
VVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDG
NRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAI
KDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQG
TMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNA
FINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPVN
ISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKEH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1oflA00
XVVASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKD
GNRAIQAWKSHGPGLVAIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARA
IKDGSVGGPAMYHRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQ
GTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANN
AFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDKPYVYPFFKDDYFIAGKNSWTGNVALGVEKGIPV
NISANRSAYKPVKIKDIQPIEGIALDLNALISKGITGKPLSWDEVRPYWLKEMPGTYALTARLSADRAAKFKAVIKRNKE
H
BLAST against CATH

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Domain History Events (5)

Classification merge by cuff on 25 Apr 2006 18:28

COMMENT: Ali - superpositions quite good, and decent SSAP scores thoughout. HMM overlap and evalues poor in some cases.SCOP suggests that 2.160.20.10 domains belong to the family pectin lyase and 2.160.20.30 to the family chondroitinase B.I would (tentively) suggest that these stay as they are ... same at T level but different at H level FINAL: Lesley - Merge, based on SCOP for this one as our scores are only marginal for an H-level match due to embellishment. Alison, SCOP has all of the domains classed in the same superfamily (pectin lyase-like). We are only interested in the H-level which equals superfamily in SCOP. family is based on 35% seq id in CATH. Not to worry about that here.

Flow stage update by cuff on 25 Apr 2006 18:28

COMMENT: Ali - superpositions quite good, and decent SSAP scores thoughout. HMM overlap and evalues poor in some cases.SCOP suggests that 2.160.20.10 domains belong to the family pectin lyase and 2.160.20.30 to the family chondroitinase B.I would (tentively) suggest that these stay as they are ... same at T level but different at H level FINAL: Lesley - Merge, based on SCOP for this one as our scores are only marginal for an H-level match due to embellishment. Alison, SCOP has all of the domains classed in the same superfamily (pectin lyase-like). We are only interested in the H-level which equals superfamily in SCOP. family is based on 35% seq id in CATH. Not to worry about that here.

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"