CATH Domain: 1od6A00 XML data for domain: 1od6A00

Molscript image for 1od6A00
1od6A00
PDB coordinates for domain 1od6A00

PDB 1od6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.13
3.40.50.620.13.2
3.40.50.620.13.2.1
3.40.50.620.13.2.1.1
3.40.50.620.13.2.1.1.1

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Segment boundaries for domain 1od6A00

Chopping figure for domain 1od6A00
DomainStart PDB ResidueStop PDB Residue
1od6A00 1 160

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.50.620.13.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3h05A00 85.56 Putative uncharacterized protein VPA0413Nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]Vibrio parahaemolyticusNicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.620 152 15 87 2.41 2.75
1ej2A00 84.81 Methanothermobacter thermautotrophicus str. Delta HNicotinamide-nucleotide adenylyltransferase 3.40.50.620 167 14 85 2.69 3.14
1lw7A01 83.71 Haemophilus influenzaeTranscriptional regulator nadRHipB family transcriptional regulator, involved in the regulation of NAD biosynthesis 3.40.50.620 165 14 81 2.48 3.03
3glvA00 81.19 Thermoplasma volcanium GSS1Lipopolysaccharide core biosynthesis proteinGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 122 19 70 2.35 3.32
1kamA00 81.12 Bacillus subtilisNicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]Nicotinate and nicotinamide metabolismNicotinate-nucleotide adenylyltransferaseMetabolic pathways 3.40.50.620 180 14 77 2.87 3.72
1cozA00 81.08 Bacillus subtilisGlycerophospholipid metabolismGlycerol-3-phosphate cytidylyltransferaseGlycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39] 3.40.50.620 126 25 75 2.68 3.56
3gmiA02 77.97 Methanocaldococcus jannaschiiUPF0348 protein MJ0951 3.40.50.620 219 16 67 3.15 4.66
1j09A01 76.02 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 8 70 3.31 4.72
1qtqA05 74.85 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 9 64 3.23 4.97
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1od6A00
MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENQYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQA
IVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLGQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1od6A00
MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRR
VGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLGQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"