CATH Domain: 1od3A00 XML data for domain: 1od3A00

Molscript image for 1od3A00
1od3A00
PDB coordinates for domain 1od3A00

PDB 1od3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.260 Galactose-binding domain-like Gene3D
2.60.120.260.11
2.60.120.260.11.1
2.60.120.260.11.1.1
2.60.120.260.11.1.1.1
2.60.120.260.11.1.1.1.1

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Segment boundaries for domain 1od3A00

Chopping figure for domain 1od3A00
DomainStart PDB ResidueStop PDB Residue
1od3A00 19 150

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.60.120.260.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1uxzA00 89.28 Cellvibrio mixtusCellulase B 2.60.120.260 131 22 93 1.87 1.99
1w0nA00 83.64 Arabinoxylan arabinofuranohydrolasePaenibacillus polymyxa 2.60.120.260 120 19 85 2.28 2.67
1ji6A02 81.32 Bacillus thuringiensisPesticidal crystal protein cry3Bb 2.60.120.260 162 13 77 2.47 3.18
1i5pA01 80.37 Pesticidal crystal protein cry2AaBacillus thuringiensis serovar kurstaki 2.60.120.260 158 12 79 3.45 4.33
2hyxA02 78.48 Mycobacterium tuberculosisProtein dipZ 2.60.120.260 131 9 78 3.55 4.52
3eb7A02 78.04 Bacillus thuringiensisCry8Ea1 2.60.120.260 164 12 75 2.68 3.54
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1od3A00
VGGTRSAFSNIQAEDYDSSYGPNLQIFSLPGGGSAIGYIENGYSTTYKNIDFGDGATSVTARVATQNATTIQVRLGSPSG
TLLGTIYVGSTGSFDTYRDVSATISNTAGVKDIVLVFSGPVNVDWFVFSKSG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1od3A00
VGGTRSAFSNIQAEDYDSSYGPNLQIFSLPGGGSAIGYIENGYSTTYKNIDFGDGATSVTARVATQNATTIQVRLGSPSG
TLLGTIYVGSTGSFDTYRDVSATISNTAGVKDIVLVFSGPVNVDWFVFSKSGT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"