CATH Domain: 1octC02 XML data for domain: 1octC02

Molscript image for 1octC02
1octC02
PDB coordinates for domain 1octC02

PDB 1oct, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.22
1.10.10.60.22.2
1.10.10.60.22.2.1
1.10.10.60.22.2.1.2
1.10.10.60.22.2.1.2.1

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Segment boundaries for domain 1octC02

Chopping figure for domain 1octC02
DomainStart PDB ResidueStop PDB Residue
1octC01 5 75
1octC02 102 161

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 1.10.10.60.22.2.1.2.1 (SIMAX score < 5)

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Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o4xA02 95.00 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 56 92 0.78 0.84
1mh3A03 93.21 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 31 89 0.86 0.96
1e3oC02 93.09 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 52 84 0.66 0.78
1b8iA00 92.54 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 26 91 3.19 3.47
2dmqA01 92.03 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 21 91 1.56 1.71
1b72A00 91.29 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 28 83 2.20 2.62
1b8iB00 90.91 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 28 94 1.35 1.42
1nk3P00 90.58 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 33 90 1.32 1.46
1lfbA00 87.41 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 28 71 0.91 1.27
1pufB00 87.37 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 26 78 1.78 2.28
1tc3C00 86.09 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 11 89 4.11 4.59
1le8B00 85.69 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 17 75 1.90 2.51
1ic8A02 85.35 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 28 71 1.30 1.82
1wjhA00 85.14 1.10.10.60 76 12 75 2.78 3.71
1mnmC00 84.86 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 19 72 1.93 2.65
1fexA00 84.82 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 10 86 2.43 2.81
1bobA03 83.71 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 12 92 3.18 3.42
1iv6A00 82.90 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 7 100 3.73 3.73
1gdtB03 82.73 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 13 75 3.00 3.98
2k9nA02 80.80 MYB24Trichomonas vaginalis 1.10.10.60 54 3 87 3.27 3.73
1hq1A00 80.20 Protein exportBacterial secretion systemEscherichia coli O157:H7Signal recognition particle proteinSignal recognition particle subunit SRP54 1.10.260.30 76 7 75 3.45 4.60
2dflA01 78.64 DNA repair and recombination protein radASulfolobus solfataricusDNA repair protein RadA 1.10.150.20 60 5 90 3.77 4.19
3bqzA01 77.76 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 8 73 3.41 4.63
1s7eA02 75.31 One cut domain, family member 1, hepatocyte nuclear factor 6Endoderm developmentPositive regulation of gene-specific transcription from RNA polymerase II promoterEndocrine pancreas developmentRegulation of cell-matrix adhesion 1.10.10.60 74 24 68 3.11 4.51
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Displaying entries 1 to 24 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1octC02
RKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1octC02
RKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"