CATH Domain: 1oboA00 XML data for domain: 1oboA00

Molscript image for 1oboA00
1oboA00
PDB coordinates for domain 1oboA00

PDB 1obo, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.360 Gene3D
3.40.50.360.3
3.40.50.360.3.1
3.40.50.360.3.1.1
3.40.50.360.3.1.1.1
3.40.50.360.3.1.1.1.1

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Segment boundaries for domain 1oboA00

Chopping figure for domain 1oboA00
DomainStart PDB ResidueStop PDB Residue
1oboA00 1001 1169

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.50.360.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fcrA00 90.74 Chondrus crispusFlavodoxin 3.40.50.360 173 38 96 1.48 1.53
1f4pA00 87.28 Desulfovibrio vulgaris str. HildenboroughFlavodoxin 3.40.50.360 147 29 84 1.89 2.25
1bvyF00 84.75 Bacillus megateriumBifunctional P-450/NADPH-P450 reductase 3.40.50.360 152 15 84 2.49 2.94
1ja1A01 84.65 Nitric oxide catabolic processRattus norvegicusMicrosomeCellular response to peptide hormone stimulusNADPH-ferrihemoprotein reductase [EC:1.6.2.4] 3.40.50.360 172 18 85 2.40 2.81
5nulA00 83.81 Clostridium beijerinckiiFlavodoxin 3.40.50.360 138 23 79 2.21 2.77
1e5dA01 83.30 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 15 81 2.32 2.86
2ohhA02 83.00 Type A flavoprotein fprAMethanothermobacter marburgensis str. Marburg 3.40.50.360 144 15 79 2.51 3.14
3gfsC00 82.45 Bacillus subtilisFMN-dependent NADPH-azoreductase 3.40.50.360 169 13 83 2.68 3.21
3d7nA00 82.09 Agrobacterium tumefaciens str. C58Flavodoxin, WrbA-like protein 3.40.50.360 153 15 83 2.69 3.22
1vmeA02 80.65 Thermotoga maritimaPutative uncharacterized protein 3.40.50.360 144 17 77 3.15 4.06
2arkA00 80.63 FlavodoxinAquifex aeolicus 3.40.50.360 180 19 84 3.75 4.44
1ydgA00 80.61 Trp repressor binding protein WrbA, putativeTrp repressor binding proteinDeinococcus radiodurans 3.40.50.360 201 13 77 2.98 3.84
2xodA00 79.99 Bacillus anthracisProtein involved in ribonucleotide reductionNrdI protein 3.40.50.360 118 12 69 2.62 3.75
1rliD00 79.80 Bacillus subtilisPutative NAD(P)H-dependent FMN-containing oxidoreductase ywqN 3.40.50.360 168 11 79 3.04 3.81
1t0iA00 79.14 Transcription factor bindingNucleusCytosolCytoplasmic sequestering of transcription factorNAD(P)H-dependent FMN reductase LOT6 3.40.50.360 185 12 74 2.75 3.69
1sqsA00 77.64 Streptococcus pneumoniaePutative uncharacterized protein 3.40.50.360 228 10 60 2.42 3.97
2hpvA00 77.06 FMN-dependent NADH-azoreductaseFMN-dependent NADH-azoreductase [EC:1.7.-.-]Enterococcus faecalis 3.40.50.360 204 7 66 3.18 4.77
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1oboA00
AKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNG
KLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWV
AQLKSEFGL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1oboA00
AKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNG
KLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWV
AQLKSEFGL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:14

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:14

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:38

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"