CATH Domain: 1o9gA01 XML data for domain: 1o9gA01

Molscript image for 1o9gA01
1o9gA01
PDB coordinates for domain 1o9gA01

PDB 1o9g, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.7
3.40.50.150.7.1
3.40.50.150.7.1.1
3.40.50.150.7.1.1.1
3.40.50.150.7.1.1.1.1

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Segment boundaries for domain 1o9gA01

Chopping figure for domain 1o9gA01
DomainStart PDB ResidueStop PDB Residue
1o9gA01 2 101
1o9gA01 145 250
1o9gA02 102 144

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 3.40.50.150.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sqgA04 78.43 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.40.50.150 198 12 77 3.61 4.66
2b3tA02 78.40 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 16 77 3.14 4.03
1o54A02 78.22 Thermotoga maritimaTRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Putative uncharacterized protein 3.40.50.150 193 12 78 3.45 4.37
1l3iA00 77.85 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 14 76 3.21 4.20
2yvlA02 77.68 TRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Aquifex aeolicusPutative uncharacterized protein 3.40.50.150 189 13 77 2.98 3.85
1i9gA02 77.50 POSSIBLE RNA METHYLTRANSFERASETRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Mycobacterium tuberculosis 3.40.50.150 184 14 81 3.61 4.44
1ne2B00 77.12 Putative uncharacterized protein Ta1320Putative methylaseThermoplasma acidophilum 3.40.50.150 180 15 74 3.32 4.49
3cc8A00 76.87 Bacillus cereus ATCC 10987Putative uncharacterized protein 3.40.50.150 205 7 67 3.10 4.57
2qm3A02 76.66 Pyrococcus furiosusPutative uncharacterized protein 3.40.50.150 222 8 77 3.66 4.75
1af7A02 76.60 Bacterial chemotaxisTwo-component systemChemotaxis protein methyltransferase CheR [EC:2.1.1.80]Salmonella enterica subsp. enterica serovar TyphimuriumChemotaxis protein methyltransferase 3.40.50.150 194 10 74 3.30 4.43
2efjA02 76.25 Coffea canephora3,7-dimethylxanthine methyltransferase 3.40.50.150 211 7 78 3.81 4.87
3ftdA01 76.22 Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase AAquifex aeolicus 3.40.50.150 177 9 74 3.16 4.24
1vl5A00 76.10 BH2331 proteinBacillus halodurans 3.40.50.150 225 9 63 2.98 4.72
3futA01 75.62 Thermus thermophilus HB8Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase A 3.40.50.150 198 13 75 3.70 4.87
1qamA01 75.42 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 8 70 3.31 4.72
1xxlA00 75.09 Uncharacterized methyltransferase ycgJBacillus subtilis 3.40.50.150 231 7 62 3.07 4.92
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o9gA01
SAYRHAVERDSSDLACGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIA
SDVDPAPLELAAKNLALLSLPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP
AHAVIAVTDRSRKIPVAPVKALERLKIGTRSAVVRAADVLEAGP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o9gA01
XSAYRHAVERXDSSDLACGVVLHSAPGYPAFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQV
IASDVDPAPLELAAKNLALLSLPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA
LPAHAVIAVTDRSRKIPVAPVKALERLKIGTRSAVXVRAADVLEAGP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"