CATH Domain: 1o97D01 XML data for domain: 1o97D01

Molscript image for 1o97D01
1o97D01
PDB coordinates for domain 1o97D01

PDB 1o97, Chain D, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.4
3.40.50.620.4.1
3.40.50.620.4.1.1
3.40.50.620.4.1.1.1
3.40.50.620.4.1.1.1.1

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Segment boundaries for domain 1o97D01

Chopping figure for domain 1o97D01
DomainStart PDB ResidueStop PDB Residue
1o97D01 1 189
1o97D02 190 318

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.50.620.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2a1uA01 88.10 Electron transfer flavoprotein subunit alpha, mitochondrialFlavin adenine dinucleotide bindingMitochondrial matrixHomo sapiensOxidoreductase activity 3.40.50.620 186 20 95 1.64 1.71
3fetA00 82.13 Electron transfer flavoprotein alpha subunitThermoplasma acidophilumElectron transfer flavoprotein subunit alpha related protein 3.40.50.620 162 18 84 2.53 2.99
1efvB00 79.11 Mitochondrial matrixElectron transfer flavoprotein subunit betaHomo sapiensElectron carrier activity 3.40.50.620 252 15 73 2.70 3.68
1o97C00 78.09 Methylophilus methylotrophusElectron transfer flavoprotein subunit beta 3.40.50.620 251 22 72 3.04 4.17
1mjhB00 75.04 Methanocaldococcus jannaschiiUncharacterized protein MJ0577 3.40.50.620 144 6 57 2.88 4.99
2pfsA01 74.47 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 9 53 2.48 4.60
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o97D01
SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVS
ALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVF
KPLEGAGSPVVSNVDAPSVQSRSQNKDYV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o97D01
SKILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVS
ALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVF
KPLEGAGSPVVSNVDAPSVQSRSQNKDYV
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:14

Assigning to "3.40.50.620" based on similarity with "1o94D00" (NWSI: 100, NWO: 100, SPS: 97.16, SPO: 100, RMSD: 0.39)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1o97D01"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1o97D01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1o97D01"

Insertion by auto on 05 Mar 2006 23:30

Cut based on decision in database "DomChop" on "cathdb"