CATH Domain: 1o8bB01 XML data for domain: 1o8bB01

Molscript image for 1o8bB01
1o8bB01
PDB coordinates for domain 1o8bB01

PDB 1o8b, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1360 Gene3D
3.40.50.1360.8
3.40.50.1360.8.1
3.40.50.1360.8.1.1
3.40.50.1360.8.1.1.1
3.40.50.1360.8.1.1.1.1

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Segment boundaries for domain 1o8bB01

Chopping figure for domain 1o8bB01
DomainStart PDB ResidueStop PDB Residue
1o8bB01 2 124
1o8bB01 197 218
1o8bB02 125 196

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.50.1360.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xtzA01 87.91 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.40.50.1360 162 27 82 1.61 1.95
1vb5B02 78.58 Translation initiation factor eIF-2B delta subunitPyrococcus horikoshiiPutative translation initiation factor eIF-2B subunit 2-like 3.40.50.10470 181 12 68 2.87 4.19
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o8bB01
TQDELKKAVGWAALQYTIVGVGTGSTAAHFIDALGTKGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEI
NGHQIKGGGALTREKIIASVAEKFICIADASKQVDLFANRGADVALIGTPDGVKTIV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o8bB01
XTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTXKGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYV
DGADEINGHXQXIKGGGAALTREKIIASVAEKFICIADASKQVDLFANRGADVALIGTPDGVKTIVK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:14

Assigning to "3.40.50.1360" based on similarity with "1lkzB01" (NWSI: 97.2789115646258, NWO: 100, SPS: 96.89, SPO: 95, RMSD: 0.35)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1o8bB01"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1o8bB01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1o8bB01"

Insertion by auto on 05 Mar 2006 23:30

Cut based on decision in database "DomChop" on "cathdb"