CATH Domain: 1o8bA02 XML data for domain: 1o8bA02

Molscript image for 1o8bA02
1o8bA02
PDB coordinates for domain 1o8bA02

PDB 1o8b, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.260 Gene3D
3.30.70.260.1
3.30.70.260.1.1
3.30.70.260.1.1.1
3.30.70.260.1.1.1.1
3.30.70.260.1.1.1.1.1

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Segment boundaries for domain 1o8bA02

Chopping figure for domain 1o8bA02
DomainStart PDB ResidueStop PDB Residue
1o8bA01 23 124
1o8bA01 197 218
1o8bA02 125 196

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 3.30.70.260.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xtzA02 90.04 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 42 82 1.23 1.50
1i1gA02 84.59 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 18 77 2.00 2.57
1vr6A01 83.81 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 10 84 2.96 3.52
2f1fA01 82.12 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 11 81 2.97 3.67
1sqgA03 82.02 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 10 76 2.59 3.37
1zpvB00 80.34 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 11 79 3.39 4.29
2pn6A02 79.12 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 10 64 2.25 3.50
1eayD00 78.86 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 86 3.52 4.05
1earA02 78.64 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 2 76 3.78 4.92
2nzcA00 78.37 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 18 84 3.85 4.56
1y7pB01 78.20 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 7 85 3.82 4.49
1rwuA00 77.99 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 11 74 3.17 4.24
2gx8C02 77.86 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 11 64 2.82 4.36
1utaA00 77.83 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 7 84 3.33 3.94
1dtjA00 77.78 RNA-binding protein Nova-2Homo sapiens 3.30.1370.10 74 13 85 3.52 4.13
1m1hA01 77.55 Transcriptional antiterminator NusGTranscription antitermination protein nusGAquifex aeolicus 3.30.70.940 100 15 62 2.97 4.79
2w25A02 77.51 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 5 76 3.32 4.34
1kn6A00 77.49 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 10 83 3.91 4.68
1mw7A03 77.26 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 7 81 3.88 4.77
2hiyB01 77.11 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 7 67 3.07 4.53
2qmwA03 76.73 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 13 80 3.99 4.94
2rhsD06 76.47 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 11 71 3.36 4.69
2x3dF01 76.45 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 8 79 3.32 4.16
1l6rA02 76.25 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.90.1070.10 63 7 55 2.58 4.68
1nzaA00 75.71 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 10 63 2.57 4.07
3c19A01 75.54 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 13 69 3.23 4.66
2nuhA00 75.52 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 8 63 2.66 4.19
1q5yD00 75.36 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 8 82 3.89 4.72
1b7yB06 75.31 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 11 72 3.52 4.88
1gmuA01 75.22 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 8 72 3.44 4.75
2bopA00 75.06 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 8 74 3.46 4.67
1wj9A01 74.69 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 10 68 3.39 4.92
1harA02 74.36 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 8 78 3.47 4.43
1vq8S00 74.11 Large subunit ribosomal protein L23Ribosome50S ribosomal protein L23PHaloarcula marismortui 3.30.70.330 81 11 65 3.13 4.78
1r8hA00 74.02 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 5 77 3.74 4.86
2j8sA06 73.92 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 10 62 2.98 4.74
1yx2A02 72.61 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 7 66 3.17 4.75
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o8bA02
ILGKFPLPVEVIPARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGEILDPIAENAINAIPGVVTVG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o8bA02
ILGKFPLPVEVIPXARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVHGXEILDPIAXENAINAIPGVVTVG
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:14

Assigning to "3.30.70.260" based on similarity with "1lkzB02" (NWSI: 95.8333333333333, NWO: 100, SPS: 98.12, SPO: 100, RMSD: 0.29)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1o8bA02"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1o8bA02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1o8bA02"

Insertion by auto on 05 Mar 2006 23:30

Cut based on decision in database "DomChop" on "cathdb"