CATH Domain: 1o6dA00 XML data for domain: 1o6dA00

Molscript image for 1o6dA00
1o6dA00
PDB coordinates for domain 1o6dA00

PDB 1o6d, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.1280 Alpha/beta knot
3.40.1280.10 Gene3D
3.40.1280.10.4
3.40.1280.10.4.1
3.40.1280.10.4.1.1
3.40.1280.10.4.1.1.1
3.40.1280.10.4.1.1.1.1

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Segment boundaries for domain 1o6dA00

Chopping figure for domain 1o6dA00
DomainStart PDB ResidueStop PDB Residue
1o6dA00 1 147

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.1280.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vh0A00 91.06 Hypothetical proteinRibosomal RNA large subunit methyltransferase HStaphylococcus aureus 3.40.1280.10 157 34 93 1.60 1.71
1vhkA02 80.41 Bacillus subtilisRibosomal RNA small subunit methyltransferase ERibosomal RNA small subunit methyltransferase E [EC:2.1.1.-] 3.40.1280.10 160 13 72 3.05 4.21
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o6dA00
LRVRIAVIGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSSEE
FADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o6dA00
MSLRVRIAVIGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSS
EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKMTFTHGMTVLIVLEQIFRAFKIIHGENYHYEGGSHHH
HHH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:52

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"