CATH Domain: 1o54A02 XML data for domain: 1o54A02

Molscript image for 1o54A02
1o54A02
PDB coordinates for domain 1o54A02

PDB 1o54, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.24
3.40.50.150.24.1
3.40.50.150.24.1.1
3.40.50.150.24.1.1.1
3.40.50.150.24.1.1.1.1

Segment boundaries for domain 1o54A02

Chopping figure for domain 1o54A02
DomainStart PDB ResidueStop PDB Residue
1o54A01 -2 69
1o54A02 70 263

Structural Neighbourhood (35 entries)

There are 35 matching structural neighberhood comparisons for CATH ID 3.40.50.150.24.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 35 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2yvlA02 91.94 TRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Aquifex aeolicusPutative uncharacterized protein 3.40.50.150 189 39 96 1.41 1.46
1i9gA02 90.58 POSSIBLE RNA METHYLTRANSFERASETRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Mycobacterium tuberculosis 3.40.50.150 184 29 91 1.56 1.70
1l3iA00 85.18 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 20 90 3.01 3.34
1m6yA01 82.97 Thermotoga maritimaS-adenosyl-methyltransferase [EC:2.1.1.-]S-adenosyl-L-methionine-dependent methyltransferase mraW 3.40.50.150 180 13 83 3.28 3.91
1dl5A01 82.46 Thermotoga maritimaProtein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]Protein-L-isoaspartate O-methyltransferase 3.40.50.150 201 16 73 3.20 4.35
1g8aA02 82.43 Pyrococcus horikoshiiFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseFibrillarin-like pre-rRNA processing protein 3.40.50.150 176 17 82 3.08 3.72
2o57A02 82.39 3.40.50.150 160 15 76 3.26 4.28
2b3tA02 82.36 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 12 83 3.46 4.12
1dusA00 81.56 Methanocaldococcus jannaschiiProtein MJ0882 3.40.50.150 192 15 82 2.79 3.39
3c3pA00 81.47 Geobacter sulfurreducensPutative uncharacterized protein 3.40.50.150 178 16 80 2.87 3.57
2fpoC00 81.18 Ribosomal RNA small subunit methyltransferase D [EC:2.1.1.52]RRNA (guanine-N2-)-methyltransferase activityRRNA base methylationProtein bindingEscherichia coli K-12 3.40.50.150 176 9 80 2.83 3.52
1qamA01 81.13 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 15 75 3.12 4.12
1ej0A00 81.05 Ribosomal RNA large subunit methyltransferase ERRNA (uridine-2'-O-)-methyltransferase activityEnzyme-directed rRNA 2'-O-methylationRibosomal RNA large subunit methyltransferase E [EC:2.1.1.-]Escherichia coli K-12 3.40.50.150 180 14 79 3.06 3.86
3ftdA01 80.82 Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase AAquifex aeolicus 3.40.50.150 177 13 78 2.68 3.40
3c6kB03 80.82 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.40.50.150 187 9 83 3.54 4.22
2ozvA01 80.59 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.150 190 17 79 3.90 4.92
2fhpA00 80.54 Methylase, putativeEnterococcus faecalis 3.40.50.150 177 11 80 2.82 3.51
1jsxA00 80.40 Glucose inhibited division protein B [EC:2.1.-.-]RRNA base methylationRibosomal RNA small subunit methyltransferase GEscherichia coli K-12RRNA (guanine-N7-)-methyltransferase activity 3.40.50.150 193 11 86 3.77 4.38
3busB00 78.77 Lechevalieria aerocolonigenesPutative D-glucose O-methyltransferase 3.40.50.150 236 18 66 2.45 3.68
1pl8A02 78.65 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 9 64 2.80 4.36
1kolA02 78.02 Glutathione-independent formaldehyde dehydrogenasePseudomonas putida 3.40.50.720 167 10 67 3.06 4.51
1nw3A02 78.00 Histone-lysine N-methyltransferase, H3 lysine-79 specificHomo sapiens 3.40.50.150 192 12 77 2.94 3.78
2py6A03 77.70 Methylobacillus flagellatus KTMethyltransferase FkbM 3.40.50.150 177 7 79 3.08 3.89
3cvoA00 77.41 Ruegeria pomeroyiPutative uncharacterized protein 3.40.50.150 186 9 76 3.43 4.50
1wlyA02 77.38 2-haloacrylate reductaseBurkholderia sp. WS 3.40.50.720 147 11 64 3.13 4.83
3bzbB00 77.25 Cyanidioschyzon merolae strain 10DUncharacterized protein 3.40.50.150 198 8 81 3.49 4.29
1lluA02 77.16 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 9 65 2.93 4.45
1vj0A02 77.02 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.40.50.720 147 11 67 3.10 4.60
2igtA01 76.88 Agrobacterium tumefaciens str. C58SAM dependent methyltransferasePutative SAM-dependent methyltransferase 3.40.50.150 242 13 74 3.63 4.88
2efjA02 76.53 Coffea canephora3,7-dimethylxanthine methyltransferase 3.40.50.150 211 7 78 3.62 4.63
1h2bA02 76.44 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 16 65 3.17 4.86
1piwA02 75.60 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.40.50.720 137 9 66 3.14 4.73
2aefA01 74.10 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 10 54 2.58 4.74
1vi2A02 74.01 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.50.720 147 12 68 3.43 4.98
1hyeA01 73.27 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 7 60 2.99 4.93
Displaying entries 1 to 35 (page 1 of 1)


Domain ATOM Sequence

>pdb|1o54A02
LIDEIMNMKRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL
IERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFR
PYKPVPERLRPVDRMVAHTAYMIFATKVCRREE    

Domain COMBS Sequence

>pdb|1o54A02
LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG
LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLF
RPYKPVPERLRPVDRMVAHTAYMIFATKVCRREETE    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"