CATH Domain: 1o0wA02 XML data for domain: 1o0wA02

Molscript image for 1o0wA02
1o0wA02
PDB coordinates for domain 1o0wA02

PDB 1o0w, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.20 Gene3D
3.30.160.20.2
3.30.160.20.2.1
3.30.160.20.2.1.1
3.30.160.20.2.1.1.1
3.30.160.20.2.1.1.1.1

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Segment boundaries for domain 1o0wA02

Chopping figure for domain 1o0wA02
DomainStart PDB ResidueStop PDB Residue
1o0wA01 7 160
1o0wA02 168 235

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.30.160.20.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x49A01 89.83 TranslationInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingEndoplasmic reticulum unfolded protein responseMus musculus 3.30.160.20 70 30 95 1.89 1.97
1stuA00 87.86 Cytoplasmic mRNA processing bodyAsymmetric protein localization involved in cell fate determinationDrosophila melanogasterApical cortexBasal cortex 3.30.160.20 68 20 95 2.55 2.67
1t4oA00 86.82 RRNA processingRRNA transcriptionU1 snRNA 3'-end processingRibonuclease 3Nucleolus 3.30.160.20 81 26 81 2.81 3.45
2b7vA00 86.24 Rattus norvegicusNucleolusDouble-stranded RNA-specific editase 1MRNA modificationNucleoplasm 3.30.160.20 71 25 87 2.54 2.91
1qu6A02 84.70 Eukaryotic translation initiation factor 2alpha kinase activityProtein phosphatase type 2A regulator activityInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingNegative regulation of osteoblast proliferation 3.30.160.20 76 25 86 3.12 3.59
2vqeE01 84.07 RibosomeSmall subunit ribosomal protein S5Thermus thermophilus HB830S ribosomal protein S5 3.30.160.20 64 17 79 3.03 3.82
1l4sA01 78.22 Ribosome-associated inhibitor ARibosome-associated inhibitor ACytosolic small ribosomal subunitEscherichia coli K-12 3.30.160.100 91 23 67 3.13 4.67
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o0wA02
DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o0wA02
DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"