CATH Domain: 1o04A02 XML data for domain: 1o04A02

Molscript image for 1o04A02
1o04A02
PDB coordinates for domain 1o04A02

PDB 1o04, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.309 Aldehyde Dehydrogenase; Chain A, domain 2
3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2 Gene3D
3.40.309.10.2
3.40.309.10.2.1
3.40.309.10.2.1.1
3.40.309.10.2.1.1.1
3.40.309.10.2.1.1.1.1

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Segment boundaries for domain 1o04A02

Chopping figure for domain 1o04A02
DomainStart PDB ResidueStop PDB Residue
1o04A01 8 270
1o04A01 461 500
1o04A02 271 460

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.309.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wndA02 94.26 Arginine and proline metabolismBeta-Alanine metabolismGamma-aminobutyraldehyde dehydrogenaseAminobutyraldehyde dehydrogenase [EC:1.2.1.19]Escherichia coli K-12 3.40.309.10 191 34 99 0.86 0.86
3ed6A02 93.37 Glycine, serine and threonine metabolismBetaine-aldehyde dehydrogenase [EC:1.2.1.8]Staphylococcus aureusPutative uncharacterized protein 3.40.309.10 194 42 97 0.92 0.94
3k2wB02 93.12 Betaine-aldehyde dehydrogenaseLactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]Pseudoalteromonas atlantica T6cPyruvate metabolismGlyoxylate and dicarboxylate metabolism 3.40.309.10 194 32 97 1.15 1.17
1t90A02 92.09 Methylmalonate semialdehyde dehydrogenase [acylating]Bacillus subtilisMethylmalonate-semialdehyde dehydrogenase [EC:1.2.1.27]Valine, leucine and isoleucine degradationPropanoate metabolism 3.40.309.10 199 31 95 1.26 1.32
1euhA02 91.34 Glyceraldehyde-3-phosphate dehydrogenase (NADP) [EC:1.2.1.9]Glycolysis / GluconeogenesisNADP-dependent glyceraldehyde-3-phosphate dehydrogenaseMetabolic pathwaysStreptococcus mutans 3.40.309.10 193 31 95 1.37 1.43
1ad3A02 87.74 Tyrosine metabolismRattus norvegicusResponse to glucocorticoid stimulus3-chloroallyl aldehyde dehydrogenase activityCytosol 3.40.309.10 195 25 93 2.66 2.85
1ez0A02 86.16 NADP-dependent fatty aldehyde dehydrogenaseVibrio harveyi 3.40.309.10 185 13 91 2.28 2.49
1o20A02 84.09 Thermotoga maritimaGamma-glutamyl phosphate reductaseArginine and proline metabolismGlutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]Metabolic pathways 3.40.309.10 149 18 72 2.10 2.91
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o04A02
GKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQF
KKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAA
VFTKDLDKANYLSQALQAGTVWVNCYDVFG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o04A02
GKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQF
KKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAA
VFTKDLDKANYLSQALQAGTVWVNCYDVFG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"