CATH Domain: 1o04A01 XML data for domain: 1o04A01

Molscript image for 1o04A01
1o04A01
PDB coordinates for domain 1o04A01

PDB 1o04, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.605 Aldehyde Dehydrogenase; Chain A, domain 1
3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1 Gene3D
3.40.605.10.1
3.40.605.10.1.1
3.40.605.10.1.1.1
3.40.605.10.1.1.1.1
3.40.605.10.1.1.1.1.1

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Segment boundaries for domain 1o04A01

Chopping figure for domain 1o04A01
DomainStart PDB ResidueStop PDB Residue
1o04A01 8 270
1o04A01 461 500
1o04A02 271 460

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.40.605.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ed6A01 91.19 Glycine, serine and threonine metabolismBetaine-aldehyde dehydrogenase [EC:1.2.1.8]Staphylococcus aureusPutative uncharacterized protein 3.40.605.10 308 41 97 2.67 2.74
2w8nA01 90.79 Succinate-semialdehyde dehydrogenase activitySoluble fractionGamma-aminobutyric acid catabolic processCentral nervous system developmentMetabolic pathways 3.40.605.10 289 35 94 1.33 1.41
3k2wB01 90.04 Betaine-aldehyde dehydrogenaseLactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]Pseudoalteromonas atlantica T6cPyruvate metabolismGlyoxylate and dicarboxylate metabolism 3.40.605.10 292 31 95 1.34 1.40
3b4wA01 89.76 Limonene and pinene degradationFatty acid metabolismArginine and proline metabolism1,2-Dichloroethane degradationPropanoate metabolism 3.40.605.10 292 35 96 1.73 1.80
1t90A01 88.22 Methylmalonate semialdehyde dehydrogenase [acylating]Bacillus subtilisMethylmalonate-semialdehyde dehydrogenase [EC:1.2.1.27]Valine, leucine and isoleucine degradationPropanoate metabolism 3.40.605.10 280 30 91 1.92 2.10
1a4sA01 87.84 Betaine aldehyde dehydrogenaseGadus callarias 3.40.605.10 260 37 84 2.06 2.43
1uzbA01 87.37 1-pyrroline-5-carboxylate dehydrogenaseThermus thermophilus 3.40.605.10 326 30 89 2.28 2.55
1euhA01 87.12 Glyceraldehyde-3-phosphate dehydrogenase (NADP) [EC:1.2.1.9]Glycolysis / GluconeogenesisNADP-dependent glyceraldehyde-3-phosphate dehydrogenaseMetabolic pathwaysStreptococcus mutans 3.40.605.10 274 28 88 1.56 1.76
1uxtA01 86.42 Thermoproteus tenaxGlyceraldehyde-3-phosphate dehydrogenase (NADP+) 3.40.605.10 273 27 88 1.81 2.05
1ez0B01 84.96 NADP-dependent fatty aldehyde dehydrogenaseVibrio harveyi 3.40.605.10 312 20 86 3.09 3.56
1ad3A01 81.56 Tyrosine metabolismRattus norvegicusResponse to glucocorticoid stimulus3-chloroallyl aldehyde dehydrogenase activityCytosol 3.40.605.10 247 24 76 2.68 3.49
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1o04A01
VPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRL
LNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIP
WNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGST
EIGRVIQVAAGSSNLKRVTLELGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1o04A01
VPAPNQQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRL
LNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIP
WNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGST
EIGRVIQVAAGSSNLKRVTLELGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVTVKVPQKNS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"