CATH Domain: 1nytA01 XML data for domain: 1nytA01

Molscript image for 1nytA01
1nytA01
PDB coordinates for domain 1nytA01

PDB 1nyt, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.192 Leucine Dehydrogenase; Chain A, domain 1
3.40.192.10 Leucine Dehydrogenase, chain A, domain 1 Gene3D
3.40.192.10.3
3.40.192.10.3.1
3.40.192.10.3.1.1
3.40.192.10.3.1.1.1
3.40.192.10.3.1.1.1.1

[top]
Segment boundaries for domain 1nytA01

Chopping figure for domain 1nytA01
DomainStart PDB ResidueStop PDB Residue
1nytA01 1 101
1nytA01 245 258
1nytA02 102 244

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.40.192.10.3.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p77A01 89.86 Shikimate 5-dehydrogenase [EC:1.1.1.25]Haemophilus influenzaePhenylalanine, tyrosine and tryptophan biosynthesisShikimate dehydrogenaseMetabolic pathways 3.40.192.10 149 53 77 1.10 1.43
2hk9A01 88.52 Shikimate 5-dehydrogenase [EC:1.1.1.25]Phenylalanine, tyrosine and tryptophan biosynthesisShikimate dehydrogenaseMetabolic pathwaysAquifex aeolicus 3.40.192.10 139 30 82 1.40 1.71
3donA01 87.27 Shikimate 5-dehydrogenase [EC:1.1.1.25]Phenylalanine, tyrosine and tryptophan biosynthesisStaphylococcus epidermidis RP62AShikimate dehydrogenaseMetabolic pathways 3.40.192.10 137 36 81 1.71 2.09
1vi2A01 87.01 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.192.10 127 29 85 1.76 2.05
1npyA01 85.84 Shikimate 5-dehydrogenase [EC:1.1.1.25]Haemophilus influenzaePhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenase-like protein HI_0607Metabolic pathways 3.40.192.10 100 19 82 1.76 2.13
1jflA01 77.71 Aspartate racemase [EC:5.1.1.13]228aa long hypothetical aspartate racemasePyrococcus horikoshiiAlanine, aspartate and glutamate metabolism 3.40.50.1860 119 7 77 3.62 4.68
2rgyA01 76.79 LacI family transcriptional regulatorBurkholderia phymatum STM815Transcriptional regulator, LacI family 3.40.50.2300 122 3 72 3.14 4.35
[1]
Displaying entries 1 to 7 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1nytA01
METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA
LAGAVNTLMRLEDGRLLGDNTAAHAFLLWHGVLPD
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1nytA01
METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA
LAGAVNTLMRLEDGRLLGDNTAAHAFLLWHGVLPD
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"