CATH Domain: 1nykA00 XML data for domain: 1nykA00

Molscript image for 1nykA00
1nykA00
PDB coordinates for domain 1nykA00

PDB 1nyk, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.102 3-layer Sandwich
2.102.10 Rieske Iron-sulfur Protein
2.102.10.10 'Rieske'-like iron-sulphur domains Gene3D
2.102.10.10.5
2.102.10.10.5.1
2.102.10.10.5.1.1
2.102.10.10.5.1.1.1
2.102.10.10.5.1.1.1.1

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Segment boundaries for domain 1nykA00

Chopping figure for domain 1nykA00
DomainStart PDB ResidueStop PDB Residue
1nykA00 46 201

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.102.10.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1fqtA00 79.46 Biphenyl degradationBiphenyl 2,3-dioxygenase [EC:1.14.12.18]Biphenyl dioxygenase system ferredoxin subunitBurkholderia xenovorans LB400Metabolic pathways 2.102.10.10 109 15 68 2.99 4.36
3gceA00 79.37 Nocardioides aromaticivoransFerredoxin component of carbazole 1,9a-dioxygenase 2.102.10.10 104 24 65 2.68 4.10
1vm9A00 78.07 Pseudomonas mendocinaToluene-4-monooxygenase system ferredoxin subunit 2.102.10.10 109 16 69 2.73 3.91
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nykA00
TPEKEPLKPGDILVYAQGGGEPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEGV
VAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAAGEFLGPVGVQA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nykA00
TPEKEPLKPGDILVYAQGGGEPKPIRLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEGV
VAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPPRPVPQLPVRVEDGVLVAAGEFLGPVGVQASAGA
YTWRV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"