CATH Domain: 1ny5B03 XML data for domain: 1ny5B03

Molscript image for 1ny5B03
1ny5B03
PDB coordinates for domain 1ny5B03

PDB 1ny5, Chain B, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.13
1.10.8.60.13.1
1.10.8.60.13.1.1
1.10.8.60.13.1.1.1
1.10.8.60.13.1.1.1.1

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Segment boundaries for domain 1ny5B03

Chopping figure for domain 1ny5B03
DomainStart PDB ResidueStop PDB Residue
1ny5B01 1 136
1ny5B02 137 311
1ny5B03 312 385

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.10.8.60.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sxjC02 86.15 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 14 87 2.29 2.61
2chgA02 85.73 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 18 86 2.37 2.74
2z4sA02 84.49 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 16 87 2.69 3.06
1jr3D03 83.01 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 16 82 2.77 3.36
1sxjD02 81.57 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 11 85 3.04 3.57
1jqjD03 81.12 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 86 16 70 2.46 3.47
1e32A04 80.55 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 87 6 75 2.64 3.48
1r7rA06 80.05 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 58 8 77 3.27 4.25
1njgA02 79.74 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 16 81 3.34 4.12
2i5uA00 78.94 Enterococcus faecalisDnaD domain protein 1.10.10.630 75 5 76 2.88 3.79
1l8qA02 77.73 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 24 62 2.84 4.57
1im2A03 75.75 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 10 74 3.47 4.66
1sxjE02 65.76 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 6 79 3.93 4.93
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ny5B03
ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLVN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ny5B03
ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLVNSK
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:18

Assigning to "1.10.8.60" based on similarity with "1ny5A03" (NWSI: 100, NWO: 100, SPS: 97.00, SPO: 98, RMSD: 0.44)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1ny5B03"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1ny5B03"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1ny5B03"

Insertion by auto on 08 Mar 2006 20:53

Final ChopClose added based on similarity with "1ny5A" [LEE: 1, LME: 0, MR: 0, LG: 1, SS: 92.46, SI: 100, SO: 100]