CATH Domain: 1nx8B00

1nx8B00

PDB 1nx8, Chain B, Domain 0

CATH Code	Level Description	Links
3	Alpha Beta
3.60	4-Layer Sandwich
3.60.130	Double-stranded beta-helix
3.60.130.10	Clavaminate synthase-like	Gene3D
3.60.130.10.3
3.60.130.10.3.1
3.60.130.10.3.1.1
3.60.130.10.3.1.1.1
3.60.130.10.3.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1nx8B00

Domain	Start PDB Residue	Stop PDB Residue
1nx8B00	2	272

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

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Domain ATOM Sequence

>pdb|1nx8B00
SEIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYAGVGFGYRDTLKLE
GEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVLEEETFEVRVLGWFKV
PVFTDLGWVRKMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGDLLIMDNRRVIHEREEF
NDDDIVRRLYRGQTAD

BLAST against CATH

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Domain COMBS Sequence

>pdb|1nx8B00
MSEIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYADEKIGVGFGYRD
TLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVLEEETFEVRVL
ERGYYVDVSPDGWFKVPVFTDLGWVRKMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGD
LLIMDNRRVIHEREEFNDDDIVRRLYRGQTADI

BLAST against CATH

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Domain History Events (13)

Domain assigned by auto on 17 Oct 2008 15:38

Assigning to "3.60.130.10" based on similarity with "1nx4A00"

Flow stage update by auto on 17 Oct 2008 15:33

No in_process hits for Domain "1nx8B00" ready to be processed

Update comment by auto on 17 Oct 2008 15:28

Domain "1nx8B00" hits Domain "1nx4A00" (97.8021978021978% over 100%) which is currently in process