CATH Domain: 1nvmA02 XML data for domain: 1nvmA02

Molscript image for 1nvmA02
1nvmA02
PDB coordinates for domain 1nvmA02

PDB 1nvm, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.8
1.10.8.60.8.1
1.10.8.60.8.1.1
1.10.8.60.8.1.1.1
1.10.8.60.8.1.1.1.1

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Segment boundaries for domain 1nvmA02

Chopping figure for domain 1nvmA02
DomainStart PDB ResidueStop PDB Residue
1nvmA01 2 271
1nvmA02 278 341

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 1.10.8.60.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2chgA02 84.87 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 14 87 3.04 3.46
1sxjD02 82.70 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 10 82 3.23 3.90
1l8qA02 82.19 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 10 73 2.56 3.49
2z4sA02 82.12 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 6 86 3.95 4.59
1sxjC02 82.00 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 10 84 3.35 3.99
1r6bX03 81.50 ATP-dependent Clp protease ATP-binding subunit clpAATP-dependent Clp protease ATP-binding subunit ClpAProtein bindingEscherichia coli K-12 1.10.8.60 88 20 72 2.79 3.84
1sxjE02 80.89 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 7 84 3.09 3.66
1njgA02 80.81 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 7 83 3.71 4.45
1jr3D03 79.97 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 9 84 4.10 4.85
3bosA02 79.89 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 10 87 4.03 4.61
2zc2A00 78.64 DNA replication proteinStreptococcus mutansPutative uncharacterized protein 1.10.10.630 74 6 82 3.99 4.84
1ny5B03 78.26 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 1.10.8.60 74 3 77 3.73 4.84
2i5uA00 77.82 Enterococcus faecalisDnaD domain protein 1.10.10.630 75 4 78 3.86 4.91
1j09A04 75.35 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 1.10.8.70 48 4 64 3.07 4.79
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nvmA02
VDRETLGLGYAGVYSSFLRHAEIAAAKYNLKTLDILVELGHRRMVGGQEDMIVDVALDLLAAHK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nvmA02
VDRETLGLGYAGVYSSFLRHAEIAAAKYNLKTLDILVELGHRRMVGGQEDMIVDVALDLLAAHKENRA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"