CATH Domain: 1nv8B01 XML data for domain: 1nv8B01

Molscript image for 1nv8B01
1nv8B01
PDB coordinates for domain 1nv8B01

PDB 1nv8, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.15
1.10.8.10.15.1
1.10.8.10.15.1.1
1.10.8.10.15.1.1.1
1.10.8.10.15.1.1.1.1

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Segment boundaries for domain 1nv8B01

Chopping figure for domain 1nv8B01
DomainStart PDB ResidueStop PDB Residue
1nv8B01 13 85
1nv8B02 86 281

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 1.10.8.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sxjE02 80.53 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 10 78 3.63 4.60
1njgA02 80.51 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 10 80 3.46 4.31
1jr3D03 80.18 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 7 80 3.40 4.24
1in4A03 79.67 Holliday junction DNA helicase RuvBThermotoga maritimaHomologous recombinationHolliday junction ATP-dependent DNA helicase ruvB 1.10.8.60 75 7 73 3.26 4.45
1dv0A00 79.16 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 6 63 2.70 4.26
2z4sA02 78.99 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 9 76 3.40 4.45
1djxB01 78.96 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 7 69 3.45 5.00
3bosA02 77.98 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 5 70 2.50 3.55
1ifyA00 77.76 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 49 6 60 2.61 4.31
2j5yA00 77.54 Peptostreptococcal albumin-binding proteinFinegoldia magna 1.10.8.40 61 4 66 3.20 4.83
2chgA02 77.37 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 7 80 3.94 4.91
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nv8B01
KIWSLIRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLLGVSPTEEKRILELVEKRASGYPLHYILGE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nv8B01
GAMDTRKNVSGAERKIWSLIRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYP
LHYILGE
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:17

Assigning to "1.10.8.10" based on similarity with "1nv8A01" (NWSI: 100, NWO: 100, SPS: 95.30, SPO: 95, RMSD: 0.63)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1nv8B01"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1nv8B01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1nv8B01"

Insertion by auto on 05 Mar 2006 17:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"