CATH Domain: 1nupB00 XML data for domain: 1nupB00

Molscript image for 1nupB00
1nupB00
PDB coordinates for domain 1nupB00

PDB 1nup, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.11
3.40.50.620.11.1
3.40.50.620.11.1.1
3.40.50.620.11.1.1.1
3.40.50.620.11.1.1.1.1

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Segment boundaries for domain 1nupB00

Chopping figure for domain 1nupB00
DomainStart PDB ResidueStop PDB Residue
1nupB00 3 234

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.620.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kamA00 84.80 Bacillus subtilisNicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]Nicotinate and nicotinamide metabolismNicotinate-nucleotide adenylyltransferaseMetabolic pathways 3.40.50.620 180 23 84 2.76 3.27
3h05A00 83.18 Putative uncharacterized protein VPA0413Nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]Vibrio parahaemolyticusNicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.620 152 15 70 2.07 2.93
3k9wA00 80.81 Pantothenate and CoA biosynthesisMetabolic pathwaysPhosphopantetheine adenylyltransferasePantetheine-phosphate adenylyltransferase [EC:2.7.7.3]Burkholderia pseudomallei 1710b 3.40.50.620 154 14 72 3.52 4.85
1ej2A00 78.61 Methanothermobacter thermautotrophicus str. Delta HNicotinamide-nucleotide adenylyltransferase 3.40.50.620 167 14 71 3.38 4.75
1lw7A01 75.12 Haemophilus influenzaeTranscriptional regulator nadRHipB family transcriptional regulator, involved in the regulation of NAD biosynthesis 3.40.50.620 165 12 69 3.30 4.76
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nupB00
SRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDP
WESEQAQWMETVKVLRHHHSKLLRVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPIL
RMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nupB00
MKSRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRV
DPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTPAAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKF
GLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKDHGLYT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"